Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30262g00007 ATGAGTTGTTTTGCCTGTTGTGAAGAAGATGATTACGCCAAGCCTGCAGAAAATGGAGGACAATATGCCGTGAAAAACCCAGCAGGGAATGATGGAAATTATCATTCTTCAGAAACCGCAAAACCTCAGACTGTTAAAGTCCGGCCGATTGAGGTTCCTGCTATACCGGCAGATGAACTAAAAGAAATTACGAATAATTTCGCACAAGAGGCTCTGGTTGGAGAGGGATCATATGGAAGAGTATATCATGGTGTTCTTAAAAGTGGACAGGACACCGCAATCAAGAAGTTAGATGCCAGTAAACAGCCTGATGATGAATTTTCAGTCCAAGTTTCAATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAGTTGCTTGGTTATTGTATTGATGGAGGTTCCCGAGTTCTTGCTTATGAGTTTGCAGCTAACGGGTCTCTTCATGATATATTACATGGCAGAAAAGGCGTAAAAGGAGCAATGCCAGGCCCAATGTTGACATGGGCACAGAGAGTGAAAATTGCTGCTCCTGACATGGCTGCACGTCTTCATTCTACTCGTGTCCTTGGGACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGGCAATTGAATGCTAAGAGTGATGTTTACAGTTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAACCCGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAAACTAAGCGAGGATAAAGTCAAGCAGTGTGTTGATCCGAAACTTGGAGCAGAATATCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCGCTGTGTGTTCAATATGAAGCTGATTTTAGACCAAACATGAGTATTGTAGTCAAAGCTCTTCAACCTTTGTTGACGGCACGACCGGGACCTGCTAGTGAAACACCTAATTAA 942 0.4363 MSCFACCEEDDYAKPAENGGQYAVKNPAGNDGNYHSSETAKPQTVKVRPIEVPAIPADELKEITNNFAQEALVGEGSYGRVYHGVLKSGQDTAIKKLDASKQPDDEFSVQVSMVSRLKHENFVQLLGYCIDGGSRVLAYEFAANGSLHDILHGRKGVKGAMPGPMLTWAQRVKIAAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDPKLGAEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPASETPN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30262g00007 313 SUPERFAMILY Protein kinase-like (PK-like) 53 300 IPR011009 -
Stsc30262g00007 313 Pfam Protein tyrosine and serine/threonine kinase 189 297 IPR001245 GO:0004672|GO:0006468
Stsc30262g00007 313 Pfam Protein tyrosine and serine/threonine kinase 71 154 IPR001245 GO:0004672|GO:0006468
Stsc30262g00007 313 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 176 305 - -
Stsc30262g00007 313 Gene3D Phosphorylase Kinase; domain 1 30 141 - -
Stsc30262g00007 313 MobiDBLite consensus disorder prediction 16 44 - -
Stsc30262g00007 313 FunFam PTI1-like tyrosine-protein kinase 3 32 141 - -
Stsc30262g00007 313 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Stsc30262g00007 313 Gene3D Transferase(Phosphotransferase) domain 1 176 306 - -
Stsc30262g00007 313 ProSiteProfiles Protein kinase domain profile. 67 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30262g00007 Stsc-Chr30262 64585 67641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30262g00007 59 304 Receptor kinase-like Gene Family AT3G58690 41.837 9.80e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Stsc30262g00007 PK_Tyr_Ser-Thr 1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30262g00007 K13436 - tcc:18613791 531.561