Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30262g00006 ATGGCTGCAGGAAAAATCTTTGTGTCTAGTCTTTCCCTGATACTGGTGGTGGGTGTTGCCATTGGCGTAGTTGTTGCCGTGAACAACAAGGGCGATGCGGAACACCAAAAAACGGTGAACTCAATGTGCTCTGGAACAGATGACCAAAAGCTTTGCCAGGAAACGCTCAAGGATGTTCAGGCCGACGGTTCCGATCCGAAGGCCTACATCGCCGCCGCGCTGGAAGCAACCACCAAGAGTATCATTAGGGCTTTGAACATGAGTGATAGACTCTCAGTGGAACATGGACATCAAAGCCCGGGGGTGAAGATGGCCCTTGATGACTGTAAAGATTTGATGGAATTTGCCCTAGATAGTATACAGGAATCCGTCAATTTGGTCCGAGATAACAACATGCAAGGCGTTCATGATCAGACCCCTGATTTCAGGAACTGGCTCAGTGCTGTTATCTCGTACCAACAATCTTGCATGGAAGGTTTTGATGACAAACATGATGGAGAGGCAAAAGTGAAAGAACAGTTGCATACTCAAAGCTTGGACCTCATGGGGAAACTCACTGCCGTTACCCTTGATCTTGTCACCGATTTGTCTAAGGTTCTTGAAAGTTTTGGGTTGGCCTTGGATTTGAAGCCTGCCTCTCGCCGTCTCATGGAGGCAAACCAAGTGGATGCAGAAGGGTTCCCGGGTTGGATGTCCGCTGCGGACCGGAAGCTCATGGCTACTGGCGGTAGAGGCGGAGGTGGTGGGCCCAATGCTGTGGTTGCTAAAGATGGAAGTGGTCAATTTAAGACCATTAAGGATGCTATTAACTCATACCCGAATGGCTTCAAAGGAAGATATGTTATTTACATTAAGGCTGGGGTTTATGATGAGTATATTACCATTCCCAAGACTGCAGCAAATATTCTTATGTATGGTGATGGCCCAACAAAGACCATTGTCACTGGTCACAAGAACTTTGTAGATGGTGTGAAAACAATGCAGACAGCTTCCTTCGCCAACACTGCACCAGGGTTCATTGCAAAGTCCATGGCGTTCGAGAACAGTGCGGGTTGGGAAAAGCACCAAGCAGTGGCCTTCCGAAACCAAGGAGACATGTCGGCTTTCTACGACGTGGCCTTTCATGGTTTCCAAGACACCCTTTACGTCCAAGCCAACCGTCAATTCTTCCGAAACTGCGAGGTCTCCGGCACCATCGACTTCATCTTCGGCACATCCGCCACCGTAATCCAAAACTCGAGGATCATAGTGAGGAAGCCAGGTCCCCACCAATTCAACACCGTCACGGCAGACGGAACGTCACAAAAGAACATGGCAACGGGTATCATTCTCCAGAACTGCGAGATCATGCCGGAGAGGGAACTCTTCCCCGACAGACTCACAGTGAAATCATACCTTGGCAGGCCATGGAAAGAGTATGCAAAGACGGTGGTTATGGAATCCAACATTGGTGACTTGATTTCACCAGACGGATGGACTCCTTGGTCTGGATCCCAGTTTCTTAATACATTGTACTATGCTGAGTATAACAACATGGGACCCGGTTCTAATGTTCAAGGAAGGGTTAAGTGGAAAGGTTACCACCCAAGCATTGATAAGAACCAAGCTGCACAATTCACTGTTGGGCAGTTTCTCAAAGCTGGACCCTCTGGCATTGCTGACGATTGGTTGAGGGCAACTGGTATTCCCTTCGACCTTGGATTCACCAAATGA 1713 0.4857 MAAGKIFVSSLSLILVVGVAIGVVVAVNNKGDAEHQKTVNSMCSGTDDQKLCQETLKDVQADGSDPKAYIAAALEATTKSIIRALNMSDRLSVEHGHQSPGVKMALDDCKDLMEFALDSIQESVNLVRDNNMQGVHDQTPDFRNWLSAVISYQQSCMEGFDDKHDGEAKVKEQLHTQSLDLMGKLTAVTLDLVTDLSKVLESFGLALDLKPASRRLMEANQVDAEGFPGWMSAADRKLMATGGRGGGGGPNAVVAKDGSGQFKTIKDAINSYPNGFKGRYVIYIKAGVYDEYITIPKTAANILMYGDGPTKTIVTGHKNFVDGVKTMQTASFANTAPGFIAKSMAFENSAGWEKHQAVAFRNQGDMSAFYDVAFHGFQDTLYVQANRQFFRNCEVSGTIDFIFGTSATVIQNSRIIVRKPGPHQFNTVTADGTSQKNMATGIILQNCEIMPERELFPDRLTVKSYLGRPWKEYAKTVVMESNIGDLISPDGWTPWSGSQFLNTLYYAEYNNMGPGSNVQGRVKWKGYHPSIDKNQAAQFTVGQFLKAGPSGIADDWLRATGIPFDLGFTK 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30262g00006 570 FunFam Pectinesterase 248 568 - -
Stsc30262g00006 570 Pfam Plant invertase/pectin methylesterase inhibitor 38 191 IPR006501 GO:0004857
Stsc30262g00006 570 FunFam Pectinesterase 35 197 - -
Stsc30262g00006 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 196 IPR035513 -
Stsc30262g00006 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 198 IPR035513 -
Stsc30262g00006 570 CDD PMEI-like_3 41 198 - -
Stsc30262g00006 570 Gene3D - 249 568 IPR012334 -
Stsc30262g00006 570 SUPERFAMILY Pectin lyase-like 250 565 IPR011050 -
Stsc30262g00006 570 Pfam Pectinesterase 251 546 IPR000070 GO:0030599|GO:0042545
Stsc30262g00006 570 PANTHER PECTINESTERASE 19 558 - -
Stsc30262g00006 570 NCBIfam pectinesterase inhibitor domain 8 192 IPR006501 GO:0004857
Stsc30262g00006 570 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Stsc30262g00006 570 SMART PMEI_2 34 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30262g00006 Stsc-Chr30262 58605 60421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30262g00006 1 568 Carbohydrate Esterase AT3G62170 39.901 5.73e-136 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30262g00006 K01051 - gmx:100775246 833.172