LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30262g00005	ATGTGCCAAAACGCTGAGAACAAAACTCTTTGCCATGAGATCTTGAAGCCCGTGAAGGACGCCACTGACCCCAATGAATTCATTGGGGCTGTTGTGAAAGCCGCCACGGAAAGCGTCATCAAGGCCTTGAACATGAGTGACAGTCTGTCGGTTGAAAAAGGAAGCAATAACCCAGGCATAAAGATGTCATTGGATGATTGCAAAGACCTCTTGCAATCAGCCCTACACAGCCTCGAAAATTCCGCATCCTTGGTGGAACAGAACAATATCAAGGCACTTCATGACCAGTCCGCCGACTTCAGGAACTGGCTAGGCGCTGTCATCTCCTACCAACAAACCTGCCTCGACAACTTCAACGAAACCGACGTCGACGGTGAGAAGGCCATCAAGGATCAGCTTAACGCCCAGAGCTTAGACGAAATTATGCAGGTAACAGGAATCGCTCTTGATTTGGCCGCCGATTTGGACAGAATCCTCGAGCAGTTCAACTTGAGGCTCGATGTCCATCCCGGTTCTCGCCGCCTTCTGGCCTTGGATATCGACCAGCAAGGACTCCCGACCTGGCTCTCAGAGTCAGACAGGGAGCTCTTGGCTAAAGTCGACCTCCACTTGGCTAGAAGGAACTTAGGCAGTAAGAACATGGGGAAAGGAAAAGGAGGAAAAGGAAATCGTAAGGGTAAAGGCAAGGGCAAAGGCAAAGGCGGCAAAGGTAAAGCTATGGCTGCTGGTGCCGCTGCTGGTGCTGCCGCCGGTGCTGCTGCCGGTGCTGCCATTACTTTTTCTCCTGGATCCATTGAACCGGTGACCCCGGGACCAGCCCACGTGGTGGTTGCTCAGGATGGAAGTGGCAGGTTCAGGACTATCACGGAAGCTATTAATTCTTACCCAGCTGGCTTTAAGGGCAGATACGTCATTTACGTTAAGGCTGGTATCTATAACGAGTTCTTTATTATTCCTAGCACCGCAGTCAACATTCTTATGTACGGTGATGGCCCTACAAGGACTATTGTCACTGGCCGTAAGAACTTTGCTGAAGGCGTGAAAACAATGCATACCTCCACATTTGCCAATACTGCTGATGGGTTCATTGCTAAGGGAATGAGGTTCGAAAACACGGCTGGTCCCAAAGGACACCAAGCTGTGGCACTCCGAAACCAGGGAGACAAATCGGCTTTCTTCCAATGCCAGATCTTCGGTAACCAAGACACCTTGTATGTCCAAACCAACCGTCAGTTTTTCCGCGACTGCGAGATCTCCGGCACCATCGACTTCATCTTCGGCACATCTGCAACCTTGATCCAAAACTGCAAGATCATCCTCAGGAAGCCTGACCCTAAACAAGCCAACACCGTTACTGCCGACGGAACAATGCAACCCAACATGCCCACCGGAATCGTCCTCCAGAACTGCGAGATTGTCCCTGAGCCCGCCCTCTTCCCCGACAGGTTCACCATCAAGTCATACTTGGGTAGGCCATGGAAGCCTTACTCAAAGACTGTGATCATGGAATCAATGATCAGTGATGCAATTCAGTCTGATGGGTGGTTCCCTTGGGCTGGAACCGTACACCTTGATACTCTGTACTATGCTGAGTTTGCTAATAGCGGACCTGGTTCCAATGTCCAAGGAAGGATTAAGTGGAAGGGATATCAAGGACTCATTAGTAAGGATGTGGCTGCAAGGTACACTGCTGGAAGATTTCTCGGAGCTGGACCAGGTAGCAATGCTGAACAATGGTTGGGTGCTACTGGCCTTCCTTTTACCATTGGCTTTACCAAGGCTTAA	1785	0.5048	MCQNAENKTLCHEILKPVKDATDPNEFIGAVVKAATESVIKALNMSDSLSVEKGSNNPGIKMSLDDCKDLLQSALHSLENSASLVEQNNIKALHDQSADFRNWLGAVISYQQTCLDNFNETDVDGEKAIKDQLNAQSLDEIMQVTGIALDLAADLDRILEQFNLRLDVHPGSRRLLALDIDQQGLPTWLSESDRELLAKVDLHLARRNLGSKNMGKGKGGKGNRKGKGKGKGKGGKGKAMAAGAAAGAAAGAAAGAAITFSPGSIEPVTPGPAHVVVAQDGSGRFRTITEAINSYPAGFKGRYVIYVKAGIYNEFFIIPSTAVNILMYGDGPTRTIVTGRKNFAEGVKTMHTSTFANTADGFIAKGMRFENTAGPKGHQAVALRNQGDKSAFFQCQIFGNQDTLYVQTNRQFFRDCEISGTIDFIFGTSATLIQNCKIILRKPDPKQANTVTADGTMQPNMPTGIVLQNCEIVPEPALFPDRFTIKSYLGRPWKPYSKTVIMESMISDAIQSDGWFPWAGTVHLDTLYYAEFANSGPGSNVQGRIKWKGYQGLISKDVAARYTAGRFLGAGPGSNAEQWLGATGLPFTIGFTKA	594

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30262g00005	594	CDD	PMEI-like_3	1	157	-	-
	Stsc30262g00005	594	MobiDBLite	consensus disorder prediction	210	236	-	-
	Stsc30262g00005	594	MobiDBLite	consensus disorder prediction	218	234	-	-
	Stsc30262g00005	594	PANTHER	PECTINESTERASE	1	581	-	-
	Stsc30262g00005	594	SUPERFAMILY	Pectin lyase-like	272	589	IPR011050	-
	Stsc30262g00005	594	Gene3D	-	272	591	IPR012334	-
	Stsc30262g00005	594	NCBIfam	pectinesterase inhibitor domain	1	150	IPR006501	GO:0004857
	Stsc30262g00005	594	SMART	PMEI_2	1	151	IPR006501	GO:0004857
	Stsc30262g00005	594	FunFam	Pectinesterase	269	591	-	-
	Stsc30262g00005	594	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	1	133	IPR035513	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30262g00005	Stsc-Chr30262	52219	55329	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30262g00005	1	591	Carbohydrate Esterase	AT3G62170	35.158	4.17e-105	327

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30262g00005	K01051		-	gmx:100789650	466.077

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