Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30262g00003 ATGGAACAGAGAAAGCTTGTTTCTGCGGTATCTCTCTTTCTGTTGGTGGGTGTTGCATTGGGCATTGTTGCGGTTGTCCGCACCAACTACCAAGCCAGCGACACAACCGGCAACAACGGTGGATTAAGCATACATAGCAAGGCCGTTAAGGCTGTGTGCCAAAACTCCGACGACCAAATACTATGCCAAGACACACTGAATTCGGTAAACAACACCGATCCTAAAGAGTACATATCAACGATTTTAAAGACCTCCATGGAAAGCGTCATCGTGGCCTTTAACATGAGTGATAGGCTCACATTGGAGCACGGTAACAGCACCCCAGGGGTCAAGATGGCCCTCGAAGATTGTAAAGACCTGCTCCAATTCGCCATAGGGGAGTTACAAGCATCAAATCTTGTCGTACAGGACAACACACTCAACAACATAAACGATCGTGTCGACGACCTCAAGAATTGGTTGGGGGCGGTTTTTGCCTACCAACAATCATGCCTGGATGGGTTCCACACTCACGGCGAGAAGCAGGTCCGGTCGCAGCTAAATACTGGGAGTTTAGATCAGGTCGGAAAGCTTACAGGACTAGCCCTTGATGTTGTGTCTGCCATTGCACAAGTGTTGTCGAATTTTGATTTAAACCTTATCGTGAAGCCTTCTTCTCGGCGCTTATTTGAGGTTGATCAAAACGGTTACCCGGGTTGGTTCGGTGTGAAGGATCGAAAGCTTTTGGGTGATGTAAGCACGGGAGCTTCCATTGCGCCCAATGCAGTTGTTGCCAAAGATGGGAGCGGGCAATTTAATACTGTTTTGGATGCTATTAATGCGTACCCTAAAGACAATCAGGGAAGATATGTTATCTATGTTAAGGCTGGGATCTATGATGAGTATATTACTGTGGATAAACAAAAGAAAAATATTTTGATGTATGGAGATGGCCCCGACAAGACCATTATTACTGGTAGTAAAAATTTTGTTGATGGTTGGAAGACAATGAGAACTGCTACCTTTGCCACGGTTGCTGAAGATTTCGTGGCGAAATCAATTGCATTCGAGAACACAGCCGGTGCAAGCAAACACCAAGCAGTGGCACTTCGCGTGCAGGGTGACCGCTCAGCTTTCTTCGACTGTGCCATTCGTGGCTACCAAGACACACTATATGCCCACGCCCATCGCCAGTTCTATCGCAATTGCGAAATCTCTGTTACAGTTGACTTCATCTTCGGTTATGCCTCAACGTTAGTCCAAAACTCCAAGATCATCATCCGAAAACCCGAACCAAACCAACAAAACATCGTGGTTGCAGATGGAACACCCCAGAAGAACATGCCTACAGGGGTAGTGTTACAAAACTGTGAGATTTTTCCAGAAGCTGAACTTTTTCCTATGAAACTAACTGTGAAGTCATATCTGGCGAGGCCATGGAAGGCGTATTCAAGGGCAATCTTCATGGAGAACACAATTGGTGATTTGATTCAACCGGATGGGTATCTTCCATGGTCAGGGAACATGTACCTGGATACTTGCTTCTTTGCTGAGTATGATAACACAGGGCCAGGGGCTAACGTTGAAAGCAGAGTGAAGTGGGGTCATGGGGTTCTTAGTAAGAATGACGCTGTTCAGTACACTGCTGAACAATGGATTCAAGGTAGCGAATGGTTGCCATCTACTGGTATACCTTTTGATCCTGCCTTCACTAAAGGATGA 1701 0.4621 MEQRKLVSAVSLFLLVGVALGIVAVVRTNYQASDTTGNNGGLSIHSKAVKAVCQNSDDQILCQDTLNSVNNTDPKEYISTILKTSMESVIVAFNMSDRLTLEHGNSTPGVKMALEDCKDLLQFAIGELQASNLVVQDNTLNNINDRVDDLKNWLGAVFAYQQSCLDGFHTHGEKQVRSQLNTGSLDQVGKLTGLALDVVSAIAQVLSNFDLNLIVKPSSRRLFEVDQNGYPGWFGVKDRKLLGDVSTGASIAPNAVVAKDGSGQFNTVLDAINAYPKDNQGRYVIYVKAGIYDEYITVDKQKKNILMYGDGPDKTIITGSKNFVDGWKTMRTATFATVAEDFVAKSIAFENTAGASKHQAVALRVQGDRSAFFDCAIRGYQDTLYAHAHRQFYRNCEISVTVDFIFGYASTLVQNSKIIIRKPEPNQQNIVVADGTPQKNMPTGVVLQNCEIFPEAELFPMKLTVKSYLARPWKAYSRAIFMENTIGDLIQPDGYLPWSGNMYLDTCFFAEYDNTGPGANVESRVKWGHGVLSKNDAVQYTAEQWIQGSEWLPSTGIPFDPAFTKG 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30262g00003 566 NCBIfam pectinesterase inhibitor domain 35 179 IPR006501 GO:0004857
Stsc30262g00003 566 CDD PMEI-like_3 51 203 - -
Stsc30262g00003 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 203 IPR035513 -
Stsc30262g00003 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 200 IPR035513 -
Stsc30262g00003 566 Gene3D - 248 563 IPR012334 -
Stsc30262g00003 566 PANTHER PECTINESTERASE 19 553 - -
Stsc30262g00003 566 ProSitePatterns Pectinesterase signature 1. 279 298 IPR018040 -
Stsc30262g00003 566 Pfam Plant invertase/pectin methylesterase inhibitor 48 196 IPR006501 GO:0004857
Stsc30262g00003 566 SUPERFAMILY Pectin lyase-like 251 560 IPR011050 -
Stsc30262g00003 566 FunFam Pectinesterase 248 563 - -
Stsc30262g00003 566 SMART PMEI_2 44 198 IPR006501 GO:0004857
Stsc30262g00003 566 FunFam Pectinesterase 45 203 - -
Stsc30262g00003 566 Pfam Pectinesterase 254 548 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30262g00003 Stsc-Chr30262 23588 25812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30262g00003 2 566 Carbohydrate Esterase AT3G05610 38.908 7.18e-143 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30262g00003 K01051 - gmx:100820142 828.165