Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30261g00022 ATGCGCCTCTTCCTCTTCCCAGTCCTCTTCTTCCTCCTCCGCCTTCACCTCACCGCCCACTCCGCCCACATCTCCGAGCGCCGTGCCCTCCTCTCCTTCAAAGCCGCCTGCATTACCTCCGACCCCACCTCCGCCCTCTCCTCCTGGTCCCCCACCTCCCCTGACGACCACTGCACATGGCGCGGCGTTTCCTGCGACCACCGCCTCCGCCACGTCACCTCCCTCAACCTCTCTTCCCTCTCCCTCACCGGCACTCTCCAAGGCGACCACCTCTCCCTCCTGCCCTTCCTCACCAATCTCTCCCTCTCCGATAACAAACTCTCCGGCCCCCTTCCCATTTCCCTCTCCTCGCTCACAAACCTCCGTTTCCTAAACCTCTCTAACAACATCTTCAACGGAACCTTCCCTACCGAACTTTCTTTTCTTCACACTCTTGAGGTTCTTGACCTTTACAATAACAACATGACCGGTCCTCTTCCCCTCGCCGTCACTGGCATGACCGAGCTTCGCCACTTGCACCTCGGTGGAAACTTCTTTTCCGGTGAGATTCCTCCCGAGTATGGCAAATGGCAGAAGCTCGAGTATCTTGCGGTTTCCGGCAACGAGCTCGTCGGAAAAATCCCGCCGGAGATTGGAAACCTTAGCTCCCTCCAGGAGCTTTATGTAGGCTACTACAACACTTACGATGGCGGAATACCGCCGGAGATCGGGAACTTGTCTGAGCTTATCAGGCTCGACGCCGCATACTGTGGAATCTCCGGCGAGATTCCGCCGGAGATAGGGAGGCTTCAGAAGCTCGACACACTCTTTCTCCAGGTGAATGCGCTTTCCGGTTCTCTAACACCGGAGCTCGGGAGCCTCAAAAGCCTGAAATCCATGGATTTATCAAACAACATGCTTGCCGGCGAGGTTCCGGCGAGCTTCGCGGCGCTGAAGAACATAACTCTCTTGAACCTCTTCCGTAACAAGCTCCATGGTGAGATACCGGAGTTCATCGGGGAGCTTCCGTCGCTGGAGGTGCTTCAACTGTGGGACAACAACTTCACCGGAAGCATTCCTCAGAATTTAGGGAAGAACGGCAGGCTCACGATCGTCGACCTTTCGTCGAACAAGCTGACCGGAACTTTGCCACCGTTAATGTGTTCTGGTAACCGTCTTCAGACACTGATAACTCTCGGTAACTTCCTCTTTGGTCCAATCCCTGATTCACTCGGAAAGTGTGAGTCTCTGAGTAGGGTGAGAATGGGTGATAATTTCTTGAACGGTTCAATCCCTAAGGGACTGTTTGGGCTTCCGAAACTCACACAGGTTGAGCTTCAGGATAATCTTCTCACCGGAGAGTTTCCTGTTTCTACTTCTGTTGCACCGAACTTGGGGCAAATCACTCTTTCCAATAACAAGCTTTCGGGGCGTTTACCGCCCTCCATTGGGAACTTCTCTGGCATGCAGAAGCTTCTACTCGACGGAAACCAGTTCTCGGGCCGGATCCCGCCGGAGATTGGTAGGCTACAGCAGCTCTCCAAGATGGATTTTAGCAATAATAAGTTCTCCGGTCCGGTTGCCCCGGAGATCAGCCGGTGCAAGTTGTTGACATTCGTTGATCTCAGCCGGAATGAGCTATCCGGGGAGGTTCCGAATGAGATCACCGGAATGCGGATACTGAACTACTTGAACCTTTCGAGGAACCACTTGGTTGGTTCAATTCCGGGTTCTATTGCTTACATGCAGAGTTTAACATCAGTGGATTTCTCTTATAACAATCTCTCTGGTTTAGTTCCGGGCACTGGCCAATTCAGCTATTTCAATTATACCTCTTTCTTGGGGAACCCTGAACTCTGCGGCCCTTATTTGGGTCCTTGCAAAGACGGTGTTGTCAATGGCCCTCGCCAACCTCATGTTAAGGGTCCACTATCTTCTTCCTTGAAGCTATTGCTGGTTATCGGGCTACTTGTTTGCTCCATCCTGTTCGCTGTCGCGGCGATCTTCAAGGCGCGGTCGCTGAAGAAGGCGAGCGAGGCACGTGCCTGGAAGCTCACAGCTTTCCAGCGATTGGACTTCACTGTGGACGATGTTCTGGATTGTTTGAAGGAGGATAACATCATTGGAAAAGGAGGTGCTGGAATTGTGTACAAAGGGGCCATGGCGAATGGGGATCAAGTTGCTGTAAAGAGGTTACCAGCTATGAGTAGAGGATCATCCCATGATCATGGTTTCAATGCTGAGATTCAAACTCTGGGGAGGATTCGACACAGGCACATTGTTAGGTTGTTGGGGTTCTGTTCGAACCACGAGACGAATCTTCTTGTGTATGAGTACATGCCTAATGGAAGCTTGGGTGAGGTTCTTCATGGGAAGAAAGGGGCCAAGTTCCTCCAAGATTCTGGAACATCTGAATGCATGTCTGCTATTGCCGGGTCATATGGATACATAGCTCCAGAGTATGCCTACACTTTGAAAGTCGATGAGAAGAGCGATGTGTACAGCTTTGGTGTTGTTCTTTTGGAGCTTGTAACAGGAAAGAAACCGGTTGGTGAGTTCGGTGACGGTGTAGACATTGTGCAATGGGTGAGGAAAATGACAGACTCAAACAAGGAAGGAGTGCTTAAGGTTCTTGATCCAAGGCTTCCCTCAGTTCCCCTCCACGAGGTGATGCACATTTTCTATGTCGCCATGCTGTGTGTCGAAGAACAAGCCGTAGAGCGACCAACCATGCGCGAAGTGGTTCAAATTCTCACTGAGCTTCCAAAGCCACCAAGCTCAAAGCAGCAGGGAGATTCAACAATCACCGAGTCCTCATCATTGTCTTCATCAAACAGCTTAGAGTCTCCGACCGCGGCATCTTCGAAAGAGCCTACTAAAGATAATCAAAACCCTCCTAAGTCACCACCACCAGATCTTCTTAGCATCTAA 2910 0.5148 MRLFLFPVLFFLLRLHLTAHSAHISERRALLSFKAACITSDPTSALSSWSPTSPDDHCTWRGVSCDHRLRHVTSLNLSSLSLTGTLQGDHLSLLPFLTNLSLSDNKLSGPLPISLSSLTNLRFLNLSNNIFNGTFPTELSFLHTLEVLDLYNNNMTGPLPLAVTGMTELRHLHLGGNFFSGEIPPEYGKWQKLEYLAVSGNELVGKIPPEIGNLSSLQELYVGYYNTYDGGIPPEIGNLSELIRLDAAYCGISGEIPPEIGRLQKLDTLFLQVNALSGSLTPELGSLKSLKSMDLSNNMLAGEVPASFAALKNITLLNLFRNKLHGEIPEFIGELPSLEVLQLWDNNFTGSIPQNLGKNGRLTIVDLSSNKLTGTLPPLMCSGNRLQTLITLGNFLFGPIPDSLGKCESLSRVRMGDNFLNGSIPKGLFGLPKLTQVELQDNLLTGEFPVSTSVAPNLGQITLSNNKLSGRLPPSIGNFSGMQKLLLDGNQFSGRIPPEIGRLQQLSKMDFSNNKFSGPVAPEISRCKLLTFVDLSRNELSGEVPNEITGMRILNYLNLSRNHLVGSIPGSIAYMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPELCGPYLGPCKDGVVNGPRQPHVKGPLSSSLKLLLVIGLLVCSILFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMANGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGKKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHIFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKQQGDSTITESSSLSSSNSLESPTAASSKEPTKDNQNPPKSPPPDLLSI 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30261g00022 969 Gene3D Phosphorylase Kinase; domain 1 661 772 - -
Stsc30261g00022 969 MobiDBLite consensus disorder prediction 912 969 - -
Stsc30261g00022 969 SMART LRR_typ_2 575 598 IPR003591 -
Stsc30261g00022 969 SMART LRR_typ_2 166 190 IPR003591 -
Stsc30261g00022 969 SMART LRR_typ_2 335 359 IPR003591 -
Stsc30261g00022 969 SMART LRR_typ_2 287 310 IPR003591 -
Stsc30261g00022 969 SMART LRR_typ_2 479 503 IPR003591 -
Stsc30261g00022 969 ProSiteProfiles Protein kinase domain profile. 695 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30261g00022 969 Pfam Protein kinase domain 697 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30261g00022 969 Gene3D Ribonuclease Inhibitor 23 225 IPR032675 -
Stsc30261g00022 969 Gene3D Transferase(Phosphotransferase) domain 1 773 936 - -
Stsc30261g00022 969 MobiDBLite consensus disorder prediction 915 955 - -
Stsc30261g00022 969 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 88 331 - -
Stsc30261g00022 969 SUPERFAMILY Protein kinase-like (PK-like) 687 911 IPR011009 -
Stsc30261g00022 969 Gene3D Ribonuclease Inhibitor 226 383 IPR032675 -
Stsc30261g00022 969 Gene3D Ribonuclease Inhibitor 530 620 IPR032675 -
Stsc30261g00022 969 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 227 788 - -
Stsc30261g00022 969 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Stsc30261g00022 969 SUPERFAMILY L domain-like 304 620 - -
Stsc30261g00022 969 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 339 624 - -
Stsc30261g00022 969 SUPERFAMILY RNI-like 74 397 - -
Stsc30261g00022 969 Gene3D Ribonuclease Inhibitor 384 454 IPR032675 -
Stsc30261g00022 969 Gene3D Ribonuclease Inhibitor 455 529 IPR032675 -
Stsc30261g00022 969 Pfam Protein tyrosine and serine/threonine kinase 806 911 IPR001245 GO:0004672|GO:0006468
Stsc30261g00022 969 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 664 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30261g00022 Stsc-Chr30261 150953 154965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30261g00022 16 943 Receptor kinase-like Gene Family AT5G65700 71.907 0.0 1378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc30261g00022 PK_Tyr_Ser-Thr 1.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30261g00022 - - gmx:100499646 1509.2