Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30260g00019 ATGGGGGCTTGCACTTCCAAGCCTCACAAACCCAACCCTTACTCTTCTCGTAACCCCCAACCTCTTCCTTCTCACCCTTACGATCCCTCCCAGCAAATCCCCAAAACCCCTCTCACTCCCGCCCGTGACCGCAAAGATGACGTCATCGCCGGAAAACAGTCCCCCTTCTTCCCCTTCTACAGCCCCAGCCCCGCACGCTTCCTCAAGAAGTCTCCGGCTCCGACGCCCGGAGGAGGAGGCAGCAAGAGTGCCAGCTCCACGCCGAGGAGGTTTTTCCGGCGACCGTTCCCGCCGCCGTCTCCGGCGAAGCACATAAGGGCTGTGCTGGCTAGGCGGCAGGGCAAGAAGGCGGCATCGGCGATACCGGAGGAAGGAGAGGAGGAGGGAGGAGGAGGCGCCGTGGATTTGGATAAGAGGTTCGGGTTCTCGAAGGAGTTCACAAGTAGGCTTGAGGTTGGGGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGCCAGCAAGTTGCTGTTAAAGTCATCCCAAAAGCTAAGATGACAACAGCAATTGCAATAGAAGATGTGAGAAGGGAGGTTAAAATATTGCGAGCTTTGAACGGACACAAGAATCTGGTACAATACTATGATGCATTTGAAGATCAAGATAATGTCTACATTGTGATGGAGTTATGCGAAGGTGGTGAGCTTTTGGATAGGATACTATCAAAAGGAGGGAAATACTCAGAAGACGATGCGAAGGCTGTCATGGTACAAATACTAAATGTTGTTGCATTTTGCCATCTTCAAGGTGTGGTGCATCGAGATCTTAAGCCAGAGAATTTTCTATATACATCAAAGGATGAAAGCTCGGAGTCAGAGCTAAAAGCAATTGACTTTGGGTTATCAGACTTTGTCCGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATACTATGTGGCCCCTGAAGTTCTCCATAGATCTTACAGCACAGAGGCTGATGTGTGGAGTATAGGCGTGATCGCATATATTCTTTTGTGTGGTAGTCGCCCATTTTGGGCCCGAACGGAGTCTGGTATTTTTAGGGCAGTTTTGAAAGCCGATCCCAGCTTCGATGAGCCTCCTTGGCCTTCTTTATCTACAGAAGCAAAAGATTTTGTCAAACGCCTACTCAATAAGGATCCACGGAAGCGAATATCTGCTGCTCAAGCTCTAAGTCACCCCTGGTTAAGGAATTACAATAATGTAAAAGTCCCACTTGATCTTCTAATATTTAAGCTCATGAAGATCTATATGCGATCATCATCCCTGCGTAAGGCTGCCTTAAGGGCCTTGTCCAAGACACTAACTGCTGATGAACTCTATTATCTAAGGGAGCAATTTGCATTGTTAGAACCAAGCAAAAATGGCAGCATATCCTTAGAGAACATTAGCAAGGCCTTGATGAAACAAGCGACGGATGCCATGAAAGAGTCTCGCATCCCAGATTTTCTTGCTTCGCTAAATCCATTACAATATAGAAGAATGGATTTTGAAGAATTCTGTGCTGCTGCATTAAGCGTACATCAGCTCGAAGCTCTCGATCGCTGGGAACAACACGCACGATGTGCATACGAGCTCTTCGAGAAAGATGGAAACAGGGCTATTATGATTGAAGAACTTGCTTCGGAACTTGGGCTTGGTCCTTCTATCCCTGTTCATGTGGTTCTTCATGACTGGATAAGACACACTGATGGAAAGCTAAGCTTTCTTGGGTTTGTCAAATTATTACATGGTGTATCTAGCAGAAGTCTTGCAAAGGTTCAATAA 1821 0.4717 MGACTSKPHKPNPYSSRNPQPLPSHPYDPSQQIPKTPLTPARDRKDDVIAGKQSPFFPFYSPSPARFLKKSPAPTPGGGGSKSASSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKAASAIPEEGEEEGGGGAVDLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHKNLVQYYDAFEDQDNVYIVMELCEGGELLDRILSKGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSESELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPSLSTEAKDFVKRLLNKDPRKRISAAQALSHPWLRNYNNVKVPLDLLIFKLMKIYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLENISKALMKQATDAMKESRIPDFLASLNPLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIMIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30260g00019 606 SUPERFAMILY Protein kinase-like (PK-like) 146 453 IPR011009 -
Stsc30260g00019 606 PANTHER SERINE/THREONINE-PROTEIN KINASE 137 581 - -
Stsc30260g00019 606 SMART serkin_6 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30260g00019 606 Pfam Protein kinase domain 151 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30260g00019 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Stsc30260g00019 606 Gene3D Phosphorylase Kinase; domain 1 152 239 - -
Stsc30260g00019 606 SUPERFAMILY EF-hand 442 596 IPR011992 -
Stsc30260g00019 606 Gene3D Transferase(Phosphotransferase) domain 1 240 430 - -
Stsc30260g00019 606 FunFam Calcium-dependent protein kinase SK5 324 419 - -
Stsc30260g00019 606 Gene3D - 432 593 - -
Stsc30260g00019 606 FunFam CDPK-related kinase 1 143 238 - -
Stsc30260g00019 606 MobiDBLite consensus disorder prediction 1 134 - -
Stsc30260g00019 606 FunFam CDPK-related kinase 3 142 316 - -
Stsc30260g00019 606 CDD STKc_CAMK 151 413 - -
Stsc30260g00019 606 Gene3D - 454 523 - -
Stsc30260g00019 606 FunFam CDPK-related kinase 1 450 523 - -
Stsc30260g00019 606 MobiDBLite consensus disorder prediction 14 30 - -
Stsc30260g00019 606 ProSiteProfiles Protein kinase domain profile. 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30260g00019 606 ProSitePatterns Protein kinases ATP-binding region signature. 156 182 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30260g00019 Stsc-Chr30260 145493 150600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30260g00019 1 602 EF-hand Containing Proteins AT3G50530 72.812 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc30260g00019 Pkinase 3.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30260g00019 K13412 - gmx:100798913 1034.25