Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30259g00025 ATGGATATTACCGACACGCCACGGAATAGTGACACAGATACTGATCTATATCCACTGCTGATGGAGCAGTTGGTATCCCACGATGATCATCAGCACATAATTGATATTACAAGGAGCAATGATGCGTTATCCAACTCATCTAATAATCAACGCCCTGCAGTGCATGAAAATCGAACTAGTGTCAGCACCGATGTCCCTACCCGTGAAACATCTTCGTTTTCTTCACCTAGATTTAGTCCTAGAAGTTCTACATCGACAAGAGGTGAGGGGTACAATCATCGCAGAAGGAGCCCACTAAATTCTGGTCTATGGATTTCTGTAGAGCTTGTTGTCACTTTGGGTCAGATCATATCATCTGTTGTTGTCTTGTCACTATCAAGAGATGAACATCCCCAAGCCCCATTATTTGCATGGATTGTGGGTTATGCAGCTGGTTGTTTTGCTACACTTCCTATTCTTTACTGGCGATACCGAAACTATAACCAAAGTGCAGAACAAGATATATCCCAATCATCTCAAGGTTCTTTAAGCAACCCTTCAGATACTACATATACTGCCATATCTGTTGCCCATAATTCAAACAACCACAGCAGTCATTCTACAGAATTGTCTGCGAGAAGTGCTAGAATTCCTGGAGCGTTTAGTTCTAGGTTTAATGGATTAGTAGACCATTTCAAAATGGCCTTGGATTGCTTCTTTGCAATTTGGTTTGTTGTAGGCAATGTTTGGATCTTTGGAGGTCACTCTTCTCCATCCGATGCTCCAAAATTGTATAGGTTATGTATAGTCTTCCTTACCTTCAGCTGCATTGGATATGCCATGCCCTTTATACTGTGTGCAACAATTTGTTGCTGCCTACCTTGCATTATTTCTGTTTTCGGCATTCCTGAGGATTTTTCACCAAACAGAGGAGCCTCAATAGAATCCATTAACGCTCTGCCAATCTATAAGTTCAAATTGAAGAAAAATGATGATAGTGGTGTTGAGGATGTCAATACTGCTGCTGAAGATGATGGTGGAATTCTGGTCGCTGGGACAGAAAAGGAACGGCCTATATCAGGAGAAGATTCTGCTTGCTGCATTTGCTTGGCAAAATATGCAGACAATGACGAGCTTCGGGAGCTACCGTGCGATCATATCTTTCATGTAGACTGTATTGATAAATGGTTACAGATAAATGCATCCTGTCCTCTTTGTAAATATGAAATTGGTGCAAACAATGAAGGTTCGCCTTTGGCCATGGATTCCAGTCAGAGCATTAGATGA 1266 0.4163 MDITDTPRNSDTDTDLYPLLMEQLVSHDDHQHIIDITRSNDALSNSSNNQRPAVHENRTSVSTDVPTRETSSFSSPRFSPRSSTSTRGEGYNHRRRSPLNSGLWISVELVVTLGQIISSVVVLSLSRDEHPQAPLFAWIVGYAAGCFATLPILYWRYRNYNQSAEQDISQSSQGSLSNPSDTTYTAISVAHNSNNHSSHSTELSARSARIPGAFSSRFNGLVDHFKMALDCFFAIWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVFGIPEDFSPNRGASIESINALPIYKFKLKKNDDSGVEDVNTAAEDDGGILVAGTEKERPISGEDSACCICLAKYADNDELRELPCDHIFHVDCIDKWLQINASCPLCKYEIGANNEGSPLAMDSSQSIR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30259g00025 421 SUPERFAMILY RING/U-box 353 405 - -
Stsc30259g00025 421 Pfam Ring finger domain 358 400 IPR001841 -
Stsc30259g00025 421 SMART ring_2 359 399 IPR001841 -
Stsc30259g00025 421 MobiDBLite consensus disorder prediction 38 87 - -
Stsc30259g00025 421 CDD RING-H2_EL5-like 359 399 - -
Stsc30259g00025 421 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 403 - -
Stsc30259g00025 421 ProSiteProfiles Zinc finger RING-type profile. 359 400 IPR001841 -
Stsc30259g00025 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 414 IPR013083 -
Stsc30259g00025 421 MobiDBLite consensus disorder prediction 38 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30259g00025 Stsc-Chr30259 156888 160965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30259g00025 1 410 C3H Transcription Factor Family AT1G80400 54.436 1.24e-166 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30259g00025 - - aip:107614650 638.262