Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30259g00012 ATGGATGGAACTGAGGATGATGATGCAAGGTATCCCTCTAACCCATATGGTGTTAATCACCAGGGTTATGGCTATCTGGGTCAGAGGAGACTTCCGGTTCGGACTTCGCCATATCCTCAGCCAGTTGCAAGTGATTTTGTGGAGCATAATGATAATGCCAATGATAATGAGGAGGAGGAGGATGAAGAAGATGAAGATGAAGTGCAGATAATAGAAGAAGATCATGATGGTGATGATGATGATTCCCAAAGGAATGCTGTCCCTGACAATGCTGAGGAAGGTGATATTGAAGACAGGGATGGGGATGAAATTGGTGGCAACAATGATGTTGGCGAGGAGGAGGAGGAGGACGACGAGGAGGAGGAGGAGGAAGATGATGAGGGTGATGCTAAGCCAACAGTTTATAGCATGAAGGATGATGATGATATAGAGTGGCATCCGAAAAAGCGAAAGCTCAAGAGTTTGATTTCAGCTTATGAATTTGCACCCCGGGTACCAGCACCATCGGCTGCAGCTCCTTCGACCCCTAAACCATCTTCTGGTGGTAGGAACTCCCTTACTGATTGGACTGAGTGTGAGACATTCGTTCTTCTTGATGCTTGGGGTGATAAGTTTCTTCAACATGGGAGGAAGAGTCTTCGATCTGAGGAATGGCAAGAAGTTGCAGAGAAGGTATCAGAAGTTTCCAAGATTGAAAGGAAGNNNNNNNNNNTAGATACATTGAAGAAGAAGTACAAGAAGGAGAAGGCAAAATTAGAGAAAATGGGTGGTGGAACTTGCAAGTGGGTTTATTTTCAGAGGATGGATAAGCTAATGTCCACTCCGGTGCAGCAATCAGGTCTTTCGTGTGGTTTGGACTCCGGCGAGTATGTGTTTACGAATCCTCGAGTTTATTTGAACCACGCAAATGGGTTGGATCAGATGAGGGATAGTCCTGGGAATTCTGAATCCATTGGCGAAGAAGGTTCAAGTGGACATAAATATAAGAAAAGAAGGTATGCGAGGTACAGCGATGATGATGATGCATCCTCATTCAGGTTGCTTGCTAATTCCATTCAGAAATTTGGCGAGATATATGAGAAGATTGAGCACACTAGAAGGCAGCAGATGGTGGAACTGGAGAAGATGAGGATGGAGTTCCATAAGGATCTTGAAACACAAAAGAGACAGATCCTAGAGAGAGTTCAGAGTGAAATTTCAAAACTACATCAGAGAGATGATGATGATGAGTAG 1233 0.4404 MDGTEDDDARYPSNPYGVNHQGYGYLGQRRLPVRTSPYPQPVASDFVEHNDNANDNEEEEDEEDEDEVQIIEEDHDGDDDDSQRNAVPDNAEEGDIEDRDGDEIGGNNDVGEEEEEDDEEEEEEDDEGDAKPTVYSMKDDDDIEWHPKKRKLKSLISAYEFAPRVPAPSAAAPSTPKPSSGGRNSLTDWTECETFVLLDAWGDKFLQHGRKSLRSEEWQEVAEKVSEVSKIERKXXXXDTLKKKYKKEKAKLEKMGGGTCKWVYFQRMDKLMSTPVQQSGLSCGLDSGEYVFTNPRVYLNHANGLDQMRDSPGNSESIGEEGSSGHKYKKRRYARYSDDDDASSFRLLANSIQKFGEIYEKIEHTRRQQMVELEKMRMEFHKDLETQKRQILERVQSEISKLHQRDDDDE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30259g00012 410 Pfam Myb/SANT-like DNA-binding domain 188 271 IPR044822 -
Stsc30259g00012 410 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 171 407 IPR044823 -
Stsc30259g00012 410 MobiDBLite consensus disorder prediction 307 321 - -
Stsc30259g00012 410 MobiDBLite consensus disorder prediction 1 186 - -
Stsc30259g00012 410 MobiDBLite consensus disorder prediction 130 155 - -
Stsc30259g00012 410 Coils Coil 239 255 - -
Stsc30259g00012 410 Coils Coil 359 379 - -
Stsc30259g00012 410 MobiDBLite consensus disorder prediction 52 79 - -
Stsc30259g00012 410 Coils Coil 228 234 - -
Stsc30259g00012 410 MobiDBLite consensus disorder prediction 303 332 - -
Stsc30259g00012 410 MobiDBLite consensus disorder prediction 107 129 - -
Stsc30259g00012 410 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30259g00012 Stsc-Chr30259 68120 70299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30259g00012 339 405 Trihelix Transcription Factor Family AT3G14180 44.776 5.90e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc30259g00012 Myb_DNA-bind_4 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30259g00012 - - tcc:18595893 383.259