Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30259g00003 | ATGACCAGTGTTCCTCATTCTATCCAAAACCCTAATCCCCAAAATACTATTAACTTGAGAAAACGAAGGAAGATCTCGGAAAACGAGAAGGTCGATTCCACCACCACCAATGCCAACACTGACACCGATGATGATAAACACTTCTATTGCAAAATCTGCACCGAAACCAAAGCGAAAAAGGAAAGATTCACCATAACCGGTTGCAACCACTCATTCTGCATAGACTGCACGGTTAAGTACGTTTCCTCAAAGGTTTATCAAATGATCCAAGTCAAAATCCATTGTCCTTTTTGCATGGATCATTTCTTGAACGTAGATGATTGCCGCAAGATTCTCCCGAAGGAGGTTTTCGATCTGTGGGGGAAGAAATTGTGCGAGGCTGAGATACCTGAATCTGACAAATTCTACTGTCCGTTCAAGGACTGTTCCGCGCTGATGATTGACGACGGCGACGACGGCAACGGCAGAAAATTGAGGAGAAAATTCGAGTGTCCGCATTGCGATAGAATGTTTTGCTCGCAGTGTAGGGTTGCTTGGCACCATGGGATCAGGTGCAAGGAGTTTCAGAATAGAGTTGGGAAAGATAAGAGGAAGAAGGATGATGAGGATGATGTGGTGATGAAGATGGCGAAGAAGAAGAGGTGGCAGAGGTGCCCTAATTGCAAGTTCTATGTTGAGAAAACTGCTGGGTGCAAACACATGAACTGTAGGTGTGGGGAGATTTTCTGTTACAAATGTGGAGAAAGTTACAAGAATGATGATGTTCTTGTTGGGGACATAGGGAGTGGAAAGACTAGTTTAGCATTAAGATTTGTAAAAGGCCTATTCTTTCATAACCAGGATACATTTGTTAAAGCCAAGAAATGGGTTGAAGAATTGCAAATGCATGTAACTTCCTTAAATGAATTAAAATTACTGCAAGATGGGGAGCAATTTGCTCATGAGAGTGGAATGTTCTACATCGAAACATCTGCTAATATCAGAGAGAACATCAATGAGCTTTTCTATGAAACAGCAAAGAGGCTAGCAAAAGCTTATGCCCCAAAGCTTATAGGGATGAAATTGAACAATGAAATGCAAGATAGAAGGAGAAGGTTCTTCTGTTGCTCAGTTTGA | 1116 | 0.4194 | MTSVPHSIQNPNPQNTINLRKRRKISENEKVDSTTTNANTDTDDDKHFYCKICTETKAKKERFTITGCNHSFCIDCTVKYVSSKVYQMIQVKIHCPFCMDHFLNVDDCRKILPKEVFDLWGKKLCEAEIPESDKFYCPFKDCSALMIDDGDDGNGRKLRRKFECPHCDRMFCSQCRVAWHHGIRCKEFQNRVGKDKRKKDDEDDVVMKMAKKKRWQRCPNCKFYVEKTAGCKHMNCRCGEIFCYKCGESYKNDDVLVGDIGSGKTSLALRFVKGLFFHNQDTFVKAKKWVEELQMHVTSLNELKLLQDGEQFAHESGMFYIETSANIRENINELFYETAKRLAKAYAPKLIGMKLNNEMQDRRRRFFCCSV | 371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30259g00003 | 371 | SMART | rab_sub_5 | 250 | 345 | - | - | |
| Stsc30259g00003 | 371 | Gene3D | - | 183 | 347 | - | - | |
| Stsc30259g00003 | 371 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 29 | 302 | IPR031127 | GO:0004842|GO:0016567 | |
| Stsc30259g00003 | 371 | SUPERFAMILY | RING/U-box | 44 | 130 | - | - | |
| Stsc30259g00003 | 371 | SUPERFAMILY | RING/U-box | 126 | 190 | - | - | |
| Stsc30259g00003 | 371 | CDD | BRcat_RBR_unk | 131 | 188 | - | - | |
| Stsc30259g00003 | 371 | SMART | ring_2 | 50 | 98 | IPR001841 | - | |
| Stsc30259g00003 | 371 | SUPERFAMILY | RING/U-box | 201 | 253 | - | - | |
| Stsc30259g00003 | 371 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 255 | 344 | IPR027417 | - | |
| Stsc30259g00003 | 371 | Pfam | IBR domain, a half RING-finger domain | 209 | 251 | IPR002867 | GO:0008270 | |
| Stsc30259g00003 | 371 | Pfam | IBR domain, a half RING-finger domain | 132 | 185 | IPR002867 | GO:0008270 | |
| Stsc30259g00003 | 371 | Pfam | Zinc finger, C3HC4 type (RING finger) | 50 | 98 | IPR018957 | GO:0046872 | |
| Stsc30259g00003 | 371 | CDD | Rcat_RBR_unk | 214 | 250 | - | - | |
| Stsc30259g00003 | 371 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 133 | IPR013083 | - | |
| Stsc30259g00003 | 371 | ProSiteProfiles | TRIAD supradomain profile. | 46 | 267 | IPR044066 | - | |
| Stsc30259g00003 | 371 | SMART | ibrneu5 | 195 | 253 | IPR002867 | GO:0008270 | |
| Stsc30259g00003 | 371 | SMART | ibrneu5 | 118 | 185 | IPR002867 | GO:0008270 | |
| Stsc30259g00003 | 371 | ProSiteProfiles | Zinc finger RING-type profile. | 50 | 98 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30259g00003 | Stsc-Chr30259 | 27072 | 29814 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc30259g00003 | 44 | 247 | C3H Transcription Factor Family | AT2G19610 | 29.524 | 1.71e-22 | 96.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30259g00003 | K11975 | - | pvy:116125934 | 238.81 |