Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30259g00003 ATGACCAGTGTTCCTCATTCTATCCAAAACCCTAATCCCCAAAATACTATTAACTTGAGAAAACGAAGGAAGATCTCGGAAAACGAGAAGGTCGATTCCACCACCACCAATGCCAACACTGACACCGATGATGATAAACACTTCTATTGCAAAATCTGCACCGAAACCAAAGCGAAAAAGGAAAGATTCACCATAACCGGTTGCAACCACTCATTCTGCATAGACTGCACGGTTAAGTACGTTTCCTCAAAGGTTTATCAAATGATCCAAGTCAAAATCCATTGTCCTTTTTGCATGGATCATTTCTTGAACGTAGATGATTGCCGCAAGATTCTCCCGAAGGAGGTTTTCGATCTGTGGGGGAAGAAATTGTGCGAGGCTGAGATACCTGAATCTGACAAATTCTACTGTCCGTTCAAGGACTGTTCCGCGCTGATGATTGACGACGGCGACGACGGCAACGGCAGAAAATTGAGGAGAAAATTCGAGTGTCCGCATTGCGATAGAATGTTTTGCTCGCAGTGTAGGGTTGCTTGGCACCATGGGATCAGGTGCAAGGAGTTTCAGAATAGAGTTGGGAAAGATAAGAGGAAGAAGGATGATGAGGATGATGTGGTGATGAAGATGGCGAAGAAGAAGAGGTGGCAGAGGTGCCCTAATTGCAAGTTCTATGTTGAGAAAACTGCTGGGTGCAAACACATGAACTGTAGGTGTGGGGAGATTTTCTGTTACAAATGTGGAGAAAGTTACAAGAATGATGATGTTCTTGTTGGGGACATAGGGAGTGGAAAGACTAGTTTAGCATTAAGATTTGTAAAAGGCCTATTCTTTCATAACCAGGATACATTTGTTAAAGCCAAGAAATGGGTTGAAGAATTGCAAATGCATGTAACTTCCTTAAATGAATTAAAATTACTGCAAGATGGGGAGCAATTTGCTCATGAGAGTGGAATGTTCTACATCGAAACATCTGCTAATATCAGAGAGAACATCAATGAGCTTTTCTATGAAACAGCAAAGAGGCTAGCAAAAGCTTATGCCCCAAAGCTTATAGGGATGAAATTGAACAATGAAATGCAAGATAGAAGGAGAAGGTTCTTCTGTTGCTCAGTTTGA 1116 0.4194 MTSVPHSIQNPNPQNTINLRKRRKISENEKVDSTTTNANTDTDDDKHFYCKICTETKAKKERFTITGCNHSFCIDCTVKYVSSKVYQMIQVKIHCPFCMDHFLNVDDCRKILPKEVFDLWGKKLCEAEIPESDKFYCPFKDCSALMIDDGDDGNGRKLRRKFECPHCDRMFCSQCRVAWHHGIRCKEFQNRVGKDKRKKDDEDDVVMKMAKKKRWQRCPNCKFYVEKTAGCKHMNCRCGEIFCYKCGESYKNDDVLVGDIGSGKTSLALRFVKGLFFHNQDTFVKAKKWVEELQMHVTSLNELKLLQDGEQFAHESGMFYIETSANIRENINELFYETAKRLAKAYAPKLIGMKLNNEMQDRRRRFFCCSV 371
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc30259g00003 371 SMART rab_sub_5 250 345 - -
Stsc30259g00003 371 Gene3D - 183 347 - -
Stsc30259g00003 371 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 302 IPR031127 GO:0004842|GO:0016567
Stsc30259g00003 371 SUPERFAMILY RING/U-box 44 130 - -
Stsc30259g00003 371 SUPERFAMILY RING/U-box 126 190 - -
Stsc30259g00003 371 CDD BRcat_RBR_unk 131 188 - -
Stsc30259g00003 371 SMART ring_2 50 98 IPR001841 -
Stsc30259g00003 371 SUPERFAMILY RING/U-box 201 253 - -
Stsc30259g00003 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 344 IPR027417 -
Stsc30259g00003 371 Pfam IBR domain, a half RING-finger domain 209 251 IPR002867 GO:0008270
Stsc30259g00003 371 Pfam IBR domain, a half RING-finger domain 132 185 IPR002867 GO:0008270
Stsc30259g00003 371 Pfam Zinc finger, C3HC4 type (RING finger) 50 98 IPR018957 GO:0046872
Stsc30259g00003 371 CDD Rcat_RBR_unk 214 250 - -
Stsc30259g00003 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 133 IPR013083 -
Stsc30259g00003 371 ProSiteProfiles TRIAD supradomain profile. 46 267 IPR044066 -
Stsc30259g00003 371 SMART ibrneu5 195 253 IPR002867 GO:0008270
Stsc30259g00003 371 SMART ibrneu5 118 185 IPR002867 GO:0008270
Stsc30259g00003 371 ProSiteProfiles Zinc finger RING-type profile. 50 98 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc30259g00003 Stsc-Chr30259 27072 29814 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30259g00003 44 247 C3H Transcription Factor Family AT2G19610 29.524 1.71e-22 96.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30259g00003 K11975 - pvy:116125934 238.81