Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30258g00032 ATGGTGCACGTCTCGTTTTACCGCAACTATGGAAAGACGTTCAAGAAGCCGCGTCGTCCGTACGAGAAGGAGAGGCTCGACGCGGAGCTGAAGCTGGTTGGAGAGTACGGACTCCGATGCAAGAGAGAGCTCTGGAGAGTGCAGTACGCACTCAGCAGGATCCGCAACAATGCCAGAACACTTCTCACTCTCGACGAGAAGAATCCTCGCCGGATCTTCGAAGGTGAGGCTCTCCTCCGGAGAATGTTCCGTTACGGACTCCTCGATGAGACTCAGAACAAGCTCGATTACGTTCTCGCTCTCACCGTCGAGAATTTCCTCGAGCGCCGCCTCCAGACTATCGTCTTCAAGTCCGGCATGGCCAAGTCCATCCACCACGCTAGGGTTCTCATCCGCCAGCGCCACATTAGGGTTGGAAGGCAGGTGGTGAACATTCCATCATTCATGGTTAGGGTTGATTCACAGAAGCACATTGACTTCAGCCTAACAAGTCCTCTTGGTGGTGGCCGTCCCGGAAGAGTGAAGCGAAAGAACCAGAGGCTTGCTTCCAAGAAGGGTGGTGGTGATGGTGATGAGGAAGATGAAGATTAA 591 0.5381 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARTLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQRLASKKGGGDGDEEDED 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30258g00032 196 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 181 IPR022801 GO:0003735|GO:0015935|GO:0019843
Stsc30258g00032 196 SMART s4_6 109 180 IPR002942 GO:0003723
Stsc30258g00032 196 Gene3D - 108 164 IPR036986 GO:0003723
Stsc30258g00032 196 MobiDBLite consensus disorder prediction 162 196 - -
Stsc30258g00032 196 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Stsc30258g00032 196 CDD S4 109 153 - -
Stsc30258g00032 196 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Stsc30258g00032 196 Pfam S4 domain 109 152 IPR002942 GO:0003723
Stsc30258g00032 196 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Stsc30258g00032 196 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Stsc30258g00032 196 FunFam 40S ribosomal protein S9 108 189 - -
Stsc30258g00032 196 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Stsc30258g00032 196 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30258g00032 Stsc-Chr30258 166393 167975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30258g00032 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.909 4.17e-125 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30258g00032 K02997 - gmx:100305663 363.999