Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30258g00023 ATGGAGAAAATGCCAGGGATTGAGGAAGCTGCTAAGCCACCATCTTCACCTTCACTACCAGATTCACCTTGGCCACCAGATTCACCTTCGTCACCTAATGTGGTGGCTGATATGGAAACGGCACAAGAGCCTCCTACAGAGCTTTCAATTATCAGTAAGAAGGGGTTTGGGACCACAGGAAAACGGATACAATTGCTTGCCAATCACTTCAAAGTTGATGCTACTGATCCAGATGCAATATTTTTCCAATATAGTGTTGCTATTACTACAGAAGATAAAAGAACTGTTGAAGGCAAGGGCATTGGGAGAAAATTGATTGATAGGCTTTACCAAACATACTCATCTGAACTTGGTGGCAAAAGGTTTTCCTACGATGGAGACAGAACTTTGTATACAGTCGGTCCTTTGCCATTCAATAAGTTTGAGTTCAAAGTATTGCTTGAGGAATCATTTGCGAAGCACCCTGGTGCTGACAATCCCAGTGCCAATGGAAGCTCTCGTGAAGAAACCAAAAGGTCAAAACATTCTTTTCAGTCAAAGGCATTCATAGTGGAGATAAGTTTTGCTGTCAAAATACCCCTGAGATCCATTGCTCTTCCGCTAGAAGAGGTTGAGTCAGATGCTAACTATCAGGATGCTTTGAGAGTGCTTGATATCACACTGAGGCAGCAAGCAGCTAATAGAGGGTGTCTCTTGGTAAGACAATCTTTTTTTCAAGATGATGCAAGGAACTTCAGTGAGATTGGAGGCGATTTGATGAGAGTTAATGGTTTTCATTCTAGTTTTCGTCCAACACTGGGCGGATTGTCTCTCAATATGGATGTGTCCACAACAGTGGTCTTAAAGCCTGGACCTGTAATTGAATTTCTTCTTCATAACCAGAATGTAACGGAAGCCCGTTATATTGACTGGGCAAAGGCAAAAAAGGTGCTTAAAAATTTAAGGGTGCATGCAAGACACTGTAACCAGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCCTGCATTCACCAACTTTTTACCATGAAGGTGAGAAATGGTGATGACAATAATCAAGGGGAGACAGTCAATATCACTGTATATGAGTATTTTGCTAAACACCACGGCTTGAAGCTGACTTTTTCTGCTTATCTCCCATGCCTTGATGTTGGGAAACCAAATCGGCCTATTTATCTGCCTCTGGAGCTGTGTTCTCTTGTTTCCCTCCAGCGGTATACAAAGGCATTAGCTCCAATGCAGAAAGCATCTTTAATTGAAAAATCACGCCAAAAACCTCAAGACAGGATTAAGACTCTGACAAACGCTGTAGGAAATAATTTCTACGATGATGACCCTGTACTTGCTGCATGTGGAATTTCTATTGAGAAGAAATTGGCTCAGGTTGAAGGTCGTGTTCTTGACCCACCAAAGTTAAAGGTTGGAAAGAATGATGATTGCTTCCCTAATAATGGAAGGTGGAGTTTCAACAAAAAGACACTTTTACAACCATCACATATTGAATACTGGGCTGTTGTCAACTTTTCTGCACGTTGTGATACCAGTTATTTATCAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGCATTAACATTGAACGCCCATATACTTTAGTAGAAGAAGAACCAGTGATGAAAAAATCTAGCGTTGTCGCAAGGGTTGAAAAGATGTTTGAGCGGCTTACATCAAAGCTGACAAGAGAACCAAGGTTAATTCTGTGTGTCTTACCAGAGAAGAAACATTGTGAAATTTATGGGCCTTGGAAGAAAAAGTGTCTCAGTGAAGTTGGTGTTGTCACACAGTGCATTTGCCCTCTCAAGATCACTGATCAATATCTTACAAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAGTAAATTCTTTGCTGGCAATAGAGCATTCTGGGCATCTACCCCTGATTAAAGATACCCCAACAATGATTTTGGGAATGGATGTCTCTCATGGTCCCCCTGGTTCAAATCATCCGTCAATAGCAGCTGTTGCTGGATCACGATGTTGGCCACTGATTTCAAGGTATAGAGCATCTGCAAGAACACAGTCATCTAAGGAGGAGATGATTGATGCCTTGTGCAAGCCTTTGGATGAAGGGAATGATAATGGTATTATCAGAGAATTGCTTCTAGATTTCTATGAATCAAGTGATAAATGTAAACCATCCCAAATTATCGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAATCAGGTTTTGAACGTTGAGCTTAGCCAGATAAAGAAGGCGTATGAGCTTCTCGAGGCTGTCATTATTCCCAAGTTTACGGTAATTGTGGCGCAGAAGAATCATCATACGAAGCTGTTTCTAGCTAATAGTCCAGACAATGTTCCTCCTGGGACTGTTGTTGACACCAAAATCACACATCCAAGGAATTATGATTTCTACATGTGTGCTCATTCAGTGATCCATGGAACATCCAAGCCTGTGCATTATCATGTATTGCTTGATGAGATTGGTTTCTCAGTTGATGGCTTACAGAATTTGATCCATTCGCTGTCTTATGTGAACCAAAGGAGTACAACTGCAACCTCAATTGTGGCACCTATATGCTATGCTCACCATGCTGCAGCTCAGATGGGGCAAATGTTGAATTTTGATGATTTATCAGAAAAATCTTCAGATGTTACTGCAGAGGGAAACATTCCCATGCCAGAGCTTCCAAGGTTGCATAGCAATGTCAAGAGTAGCATGTTCTTCTGTTGA 2742 0.4121 MEKMPGIEEAAKPPSSPSLPDSPWPPDSPSSPNVVADMETAQEPPTELSIISKKGFGTTGKRIQLLANHFKVDATDPDAIFFQYSVAITTEDKRTVEGKGIGRKLIDRLYQTYSSELGGKRFSYDGDRTLYTVGPLPFNKFEFKVLLEESFAKHPGADNPSANGSSREETKRSKHSFQSKAFIVEISFAVKIPLRSIALPLEEVESDANYQDALRVLDITLRQQAANRGCLLVRQSFFQDDARNFSEIGGDLMRVNGFHSSFRPTLGGLSLNMDVSTTVVLKPGPVIEFLLHNQNVTEARYIDWAKAKKVLKNLRVHARHCNQEFKISGLSEKPCIHQLFTMKVRNGDDNNQGETVNITVYEYFAKHHGLKLTFSAYLPCLDVGKPNRPIYLPLELCSLVSLQRYTKALAPMQKASLIEKSRQKPQDRIKTLTNAVGNNFYDDDPVLAACGISIEKKLAQVEGRVLDPPKLKVGKNDDCFPNNGRWSFNKKTLLQPSHIEYWAVVNFSARCDTSYLSRELIKCGMSKGINIERPYTLVEEEPVMKKSSVVARVEKMFERLTSKLTREPRLILCVLPEKKHCEIYGPWKKKCLSEVGVVTQCICPLKITDQYLTNVLLKINSKLGGVNSLLAIEHSGHLPLIKDTPTMILGMDVSHGPPGSNHPSIAAVAGSRCWPLISRYRASARTQSSKEEMIDALCKPLDEGNDNGIIRELLLDFYESSDKCKPSQIIVFRDGVSESQFNQVLNVELSQIKKAYELLEAVIIPKFTVIVAQKNHHTKLFLANSPDNVPPGTVVDTKITHPRNYDFYMCAHSVIHGTSKPVHYHVLLDEIGFSVDGLQNLIHSLSYVNQRSTTATSIVAPICYAHHAAAQMGQMLNFDDLSEKSSDVTAEGNIPMPELPRLHSNVKSSMFFC 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30258g00023 913 MobiDBLite consensus disorder prediction 154 173 - -
Stsc30258g00023 913 SMART Piwi_a_2 570 877 IPR003165 GO:0003676
Stsc30258g00023 913 Gene3D - 637 913 IPR036397 GO:0003676
Stsc30258g00023 913 SUPERFAMILY Ribonuclease H-like 555 877 IPR012337 -
Stsc30258g00023 913 Pfam Argonaute linker 2 domain 427 472 IPR032472 -
Stsc30258g00023 913 CDD PAZ_argonaute_like 283 400 - -
Stsc30258g00023 913 ProSiteProfiles PAZ domain profile. 308 401 IPR003100 GO:0005515
Stsc30258g00023 913 Pfam Piwi domain 570 876 IPR003165 GO:0003676
Stsc30258g00023 913 Gene3D - 465 631 - -
Stsc30258g00023 913 FunFam Protein argonaute 3 638 913 - -
Stsc30258g00023 913 SUPERFAMILY PAZ domain 278 439 IPR036085 GO:0005515
Stsc30258g00023 913 Pfam N-terminal domain of argonaute 61 221 IPR032474 -
Stsc30258g00023 913 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 43 879 - -
Stsc30258g00023 913 CDD Piwi_ago-like 445 871 IPR045246 -
Stsc30258g00023 913 Pfam PAZ domain 287 416 IPR003100 GO:0005515
Stsc30258g00023 913 MobiDBLite consensus disorder prediction 1 45 - -
Stsc30258g00023 913 SMART PAZ_2_a_3 284 423 IPR003100 GO:0005515
Stsc30258g00023 913 ProSiteProfiles Piwi domain profile. 570 877 IPR003165 GO:0003676
Stsc30258g00023 913 MobiDBLite consensus disorder prediction 16 30 - -
Stsc30258g00023 913 FunFam Protein argonaute 7 278 405 - -
Stsc30258g00023 913 SMART DUF1785_2 231 283 IPR014811 -
Stsc30258g00023 913 Pfam Argonaute linker 1 domain 233 280 IPR014811 -
Stsc30258g00023 913 Gene3D paz domain 277 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30258g00023 Stsc-Chr30258 120183 127767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30258g00023 53 913 Eukaryotic Initiation Factors Gene Family AT1G48410 36.992 2.05e-162 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30258g00023 K11593 - gmx:100778875 1358.2