Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30258g00015 ATGACTGCTGATGAAGTTGATAGTGGCTCTGAGTGGAGCTGGGAGCAGGATAAAGCATTTGAGGAAGCTTTGGTAACTTATCCGGATGATGCTCCGGATCGATGGGAGAAAATTGCGGCCGATGTACCGGGGAAATCGGTAGAAGAAATTAAGCAGCATTATGAGCTCTTGGTTGAAGATGTTAATCTGATTGAATCTGGACGTGTGACGCTACCGGCTTATAATTCTTCCGAAGGCTCAGCAACTCATGCAAGTGATGAAGGAGGTGGCAAGAAGGGGCAGCATAATACCGAGTCTAACCATGGAGCTAAAGGCTCGAGATCAGATCAGGAACGACGAAAGGGTATTGCTTGGACAGAAGATGAACACAGGTTGTTTCTTCTTGGCTTGGATAAGTACGGAAAAGGCGACTGGCGAAGCATATCGAGAAACTTCGTGGTGACAAGAACGCCGACGCAAGTAGCAAGCCATGCTCAAAAGTACTTCATTCGTTTGAACTCCATGAACAAAGATAGAAGGCGATCAAGCATACATGATATCACCAGTGTCAACAATGGTGAAGTTTCAGCACCTCAAGGACCAATTACAGGTCAAACAAACGGTCTTGCAGCCAATTCCGCCGTCAAATCACCGAAACAAGCACCTCCTCCTCCACCTCCACCTCCGGCTTCAGCTGGTGTACCAGGACTAGGACTATACTCTGCTCCTACCATTGGACAACCTATAGGAGGACCCTTAGTATCCGCCGTGGGCACCCCGGTGAATCTTCCTCCTCCTGCACACATTGCATATGGTATTCGAGCACCGGTTACTGGCACAGTTGTTCCTGGTGCACCGGTGAACATGGTTCCCATGGCATATCAGATGCCAAGCACATCTGCTTCTCACAGGTGA 894 0.4877 MTADEVDSGSEWSWEQDKAFEEALVTYPDDAPDRWEKIAADVPGKSVEEIKQHYELLVEDVNLIESGRVTLPAYNSSEGSATHASDEGGGKKGQHNTESNHGAKGSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGEVSAPQGPITGQTNGLAANSAVKSPKQAPPPPPPPPASAGVPGLGLYSAPTIGQPIGGPLVSAVGTPVNLPPPAHIAYGIRAPVTGTVVPGAPVNMVPMAYQMPSTSASHR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30258g00015 297 FunFam Transcription factor SRM1 4 71 - -
Stsc30258g00015 297 CDD SANT 117 162 IPR001005 -
Stsc30258g00015 297 CDD SANT 11 58 IPR001005 -
Stsc30258g00015 297 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Stsc30258g00015 297 MobiDBLite consensus disorder prediction 211 226 - -
Stsc30258g00015 297 Gene3D - 116 168 - -
Stsc30258g00015 297 Gene3D - 9 57 - -
Stsc30258g00015 297 FunFam transcription factor MYB1R1 116 167 - -
Stsc30258g00015 297 MobiDBLite consensus disorder prediction 184 229 - -
Stsc30258g00015 297 MobiDBLite consensus disorder prediction 184 207 - -
Stsc30258g00015 297 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Stsc30258g00015 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 114 164 IPR006447 GO:0003677
Stsc30258g00015 297 ProSiteProfiles SANT domain profile. 118 166 IPR017884 -
Stsc30258g00015 297 MobiDBLite consensus disorder prediction 74 114 - -
Stsc30258g00015 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 166 IPR017930 -
Stsc30258g00015 297 Pfam Myb-like DNA-binding domain 11 54 IPR001005 -
Stsc30258g00015 297 Pfam Myb-like DNA-binding domain 117 162 IPR001005 -
Stsc30258g00015 297 PANTHER TRANSCRIPTION FACTOR KUA1 8 291 - -
Stsc30258g00015 297 MobiDBLite consensus disorder prediction 88 114 - -
Stsc30258g00015 297 SUPERFAMILY Homeodomain-like 112 167 IPR009057 -
Stsc30258g00015 297 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Stsc30258g00015 297 SMART sant 114 164 IPR001005 -
Stsc30258g00015 297 SMART sant 8 60 IPR001005 -
Stsc30258g00015 297 ProSiteProfiles Myb-like domain profile. 110 162 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30258g00015 Stsc-Chr30258 93754 97489 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30258g00015 Myb_DNA-binding 7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30258g00015 - - ccaj:109792793 476.478