Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30258g00014 ATGCTCCCACAATTCAGTACAGCAGCAAGTGGCTCTGAGTGGAGCTGGGAGCAGGATAAAGCATTTGAGGAAGCTTTGGTAACTTATCCGGATGATGCTCCGGATCGATGGGAGAAAATTGCGGCCGATGTACCGGGGAAATCGGTAGAAGAAATTAAGCAGCATTATGAGCTCTTGGTTGAAGATGTTAATCTGATTGAATCTGGACGTGTGACGCTACCGGCTTATAATTCTTCCGAAGGCTCAGCAACTCATGCAAGTGATGAAGGAGGTGGCAAGAAGGGGCAGCATAATACCGAGTCTAACCATGGAGCTAAAGGCTCGAGATCAGATCAGGAACGACGAAAGGGTATTGCTTGGACAGAAGATGAACACAGGTTGTTTCTTCTTGGCTTGGATAAGTACGGAAAAGGCGACTGGCGAAGCATATCGAGAAACTTCGTGGTGACAAGAACGCCGACGCAAGTAGCAAGCCATGCTCAAAAGTACTTCATTCGTTTGAACTCCATGAACAAAGATAGAAGGCGATCAAGCATACATGATATCACCAGTGTCAACAATGGTGAAGTTTCAGCACCTCAAGGACCAATTACAGGTCAAACAAACGGTCTTGCAGCCAATTCCGCCGTCAAATCACCGAAACAAGCACCTCCTCCTCCACCTCCACCTCCGGCTTCAGCTGGTGTACCAGGACTAGGACTATACTCTGCTCCTACCATTGGACAACCTATAGGAGGACCCTTAGTATCCGCCGTGGGCACCCCGGTGAATCTTCCTCCTCCTGCACACATTGCATATGGTATTCGAGCACCGGTTACTGGCACAGTTGTTCCTGGTGCACCGGTGAACATGGTTCCCATGGCATATCAGATGCCAAGCACATCTGCTTCTCACAGGTGA 900 0.49 MLPQFSTAASGSEWSWEQDKAFEEALVTYPDDAPDRWEKIAADVPGKSVEEIKQHYELLVEDVNLIESGRVTLPAYNSSEGSATHASDEGGGKKGQHNTESNHGAKGSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGEVSAPQGPITGQTNGLAANSAVKSPKQAPPPPPPPPASAGVPGLGLYSAPTIGQPIGGPLVSAVGTPVNLPPPAHIAYGIRAPVTGTVVPGAPVNMVPMAYQMPSTSASHR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30258g00014 299 SUPERFAMILY Homeodomain-like 12 68 IPR009057 -
Stsc30258g00014 299 MobiDBLite consensus disorder prediction 76 116 - -
Stsc30258g00014 299 ProSiteProfiles Myb-like domain profile. 112 164 IPR001005 -
Stsc30258g00014 299 ProSiteProfiles SANT domain profile. 9 64 IPR017884 -
Stsc30258g00014 299 Gene3D - 6 73 - -
Stsc30258g00014 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 168 IPR017930 -
Stsc30258g00014 299 SMART sant 10 62 IPR001005 -
Stsc30258g00014 299 SMART sant 116 166 IPR001005 -
Stsc30258g00014 299 ProSiteProfiles Myb-like domain profile. 6 60 IPR001005 -
Stsc30258g00014 299 MobiDBLite consensus disorder prediction 90 116 - -
Stsc30258g00014 299 PANTHER TRANSCRIPTION FACTOR KUA1 10 293 - -
Stsc30258g00014 299 NCBIfam myb-like DNA-binding domain, SHAQKYF class 116 166 IPR006447 GO:0003677
Stsc30258g00014 299 ProSiteProfiles SANT domain profile. 120 168 IPR017884 -
Stsc30258g00014 299 Gene3D - 118 170 - -
Stsc30258g00014 299 FunFam Transcription factor SRM1 6 73 - -
Stsc30258g00014 299 CDD SANT 119 164 IPR001005 -
Stsc30258g00014 299 CDD SANT 13 60 IPR001005 -
Stsc30258g00014 299 Pfam Myb-like DNA-binding domain 13 56 IPR001005 -
Stsc30258g00014 299 Pfam Myb-like DNA-binding domain 119 164 IPR001005 -
Stsc30258g00014 299 FunFam transcription factor MYB1R1 118 169 - -
Stsc30258g00014 299 MobiDBLite consensus disorder prediction 213 228 - -
Stsc30258g00014 299 SUPERFAMILY Homeodomain-like 114 169 IPR009057 -
Stsc30258g00014 299 MobiDBLite consensus disorder prediction 186 231 - -
Stsc30258g00014 299 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30258g00014 Stsc-Chr30258 93754 98562 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30258g00014 Myb_DNA-binding 7.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30258g00014 - - ccaj:109792793 464.536