Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30258g00001 ATTGATTTTTCAACTTTCACAACTCTTCATCATAATCATAATGAAAATCATCAAGGTGATGCAAATAGAAACCATGGTCATGATCATGATCATGATGATGACTCTATTGAGATTATTGATGGAAAGCAAGAACATCAATTCAAAAGAAGGAGGAGAGCAGTAGTTGGGAGGAAAAGATTGGCAAAGGTTGAAAGAGATGCTGAATTTGAATTTGGTCCAAGAAAGAATAAAAATGCATTAGGAGTGATGAAGAGAGCTGAGGCTTTTTGCCTAAACTCTAAATATCCATGTTTTATCCAAGAAATGCAATTAACATATATTTCACAAGATGTTCTGCGTATACCAGCCAGCTTTTGCAGAACGCACTTATTTGGGTTAGAAGGAAAAGCCAAGATTGGAGTTAATGGTAGCATGAAATGGGATATTGAGTTAAGAATTAATGGTGAGAGAGCTACTTTCAATGCTGGTTGGAGAAATTTTTGTAGAAATTATGACTTAAAACTTGGTGATATTTGTGTCTTTGAGATGATTGAGGTCACTCCACTTTCCTTCAACATTGAAATTTTCAGAGCCAGAGAAGAACCAATAACCCCTTCACACCAAAACTTGCTACAAGCATACAATCAAAGGCTTACTCAGCCAAAGAAAGTCGAAGGGCAAAATAGTCAATCTGGAGAAAGAAAAAGAAGCAGTGATGATGGAACTTCAATGGGAATCCTTAACAGAACTCCCAACATGCAAGTTAATCAATTTGAAATTCAAATGAAAGATTATCACCTCAGTGGAGCTACCATGTATCTACCAAATGGATTTCTTCGTAGCCACAAAGAATGCCTTGGAAAATATGTGAATTTAAAAGCTGGAGAAATATCACGGTCTGTGAAATTGTTATCACGTGGTGCATTTTCTGAAGGATGGTTAGGTTTCACAAGAGATTGCAACATGAAAATTGGTGACATTTGCACATTCAACCTCGCTGATGACCAAAACATTTGCTTTGAGGTTTCAATTACAAAATCAAAAGAATAA 1029 0.3596 IDFSTFTTLHHNHNENHQGDANRNHGHDHDHDDDSIEIIDGKQEHQFKRRRRAVVGRKRLAKVERDAEFEFGPRKNKNALGVMKRAEAFCLNSKYPCFIQEMQLTYISQDVLRIPASFCRTHLFGLEGKAKIGVNGSMKWDIELRINGERATFNAGWRNFCRNYDLKLGDICVFEMIEVTPLSFNIEIFRAREEPITPSHQNLLQAYNQRLTQPKKVEGQNSQSGERKRSSDDGTSMGILNRTPNMQVNQFEIQMKDYHLSGATMYLPNGFLRSHKECLGKYVNLKAGEISRSVKLLSRGAFSEGWLGFTRDCNMKIGDICTFNLADDQNICFEVSITKSKE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30258g00001 342 MobiDBLite consensus disorder prediction 1 42 - -
Stsc30258g00001 342 Gene3D - 241 342 IPR015300 -
Stsc30258g00001 342 Gene3D - 75 194 IPR015300 -
Stsc30258g00001 342 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 82 194 IPR044837 -
Stsc30258g00001 342 MobiDBLite consensus disorder prediction 214 241 - -
Stsc30258g00001 342 ProSiteProfiles B3 DNA-binding domain profile. 97 192 IPR003340 GO:0003677
Stsc30258g00001 342 SUPERFAMILY DNA-binding pseudobarrel domain 91 190 IPR015300 -
Stsc30258g00001 342 ProSiteProfiles B3 DNA-binding domain profile. 250 341 IPR003340 GO:0003677
Stsc30258g00001 342 Pfam B3 DNA binding domain 99 191 IPR003340 GO:0003677
Stsc30258g00001 342 SUPERFAMILY DNA-binding pseudobarrel domain 245 339 IPR015300 -
Stsc30258g00001 342 CDD B3_DNA 251 339 IPR003340 GO:0003677
Stsc30258g00001 342 CDD B3_DNA 96 190 IPR003340 GO:0003677
Stsc30258g00001 342 SMART B3_2 251 341 IPR003340 GO:0003677
Stsc30258g00001 342 SMART B3_2 98 192 IPR003340 GO:0003677
Stsc30258g00001 342 MobiDBLite consensus disorder prediction 13 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30258g00001 Stsc-Chr30258 7122 9975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30258g00001 257 342 REM Transcription Factor Family AT1G49480 32.584 2.57e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30258g00001 B3 3.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30258g00001 - - adu:110277002 363.614