Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30257g00013 ATGGCCAATCACCATCCTTCCGAGGCTCCCGCCGCCGACGACTTCCTCGAGCAAATCCTCGGCCTCCCGACCTTCGCCTCCGCCGACCCCTCCCTCGCCGGAGGAACCGATGCCTCCTCTCTCGCCGCCGCCGCCGCAGCTGCTTCTCCAGTGGCGCCGATGATGCTTCAGCTCAGCTCTGGCGACGCTTCCGCTGCGCACCTCGTCGGTGCCGCCGCAGGAGGTGGTTTCCACTCGCCGCCGATGTACCAGCTTGGCCTGAGCCTGGAGCAAGGGAAAGGAGGAGGGTTCTTGAAGCCTGAGGATGCTTCTGGAAGCGGAAAACGGTTTCGTGATGACATCGTTGATGGAAGAGCTAAGAATGTTTTTCATGGGCAGCCCATGTCTACAACAGTTCCCACCGCTCCACATCCACCAGCAATGCGCCCTAGGGTGCGGGCTCGTAGAGGTCAGGCTACAGATCCCCACAGCATAGCTGAAAGGCTGCGCAGAGAACGAATAGCTGAAAGGATCAGGGCCTTGCAAGAGCTGGTTCCCAGTGTTAACAAGACAGATAGAGCTGCTATGCTCGACGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTTAAGGTTTTGAGCATGAGTAGGCTGGGTGGTGCCGGTGCAGTGGCTCCACTAGTAACTGACATCCCATTATCATCAGTCGAGGAAGAAGGTGGTGAGGGAAGAAACCAACCAGCTTGGGAGAAGTGGTCGAATGACGGCACAGAAAGGCAGGTAGCTAAGCTAATGGAAGAAAACGTTGGTGCGGCCATGCAGTTCCTCCAATCGAAGGCACTCTGCATCATGCCGATCTCACTAGCATCGGCGATATACCAGTCACAACCACCAGACACCTCTAGCATAGTTAAGCCAGAAACTAACCCTCCTTCATAG 921 0.5592 MANHHPSEAPAADDFLEQILGLPTFASADPSLAGGTDASSLAAAAAAASPVAPMMLQLSSGDASAAHLVGAAAGGGFHSPPMYQLGLSLEQGKGGGFLKPEDASGSGKRFRDDIVDGRAKNVFHGQPMSTTVPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30257g00013 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 285 - -
Stsc30257g00013 306 FunFam Basic helix-loop-helix transcription factor 146 208 - -
Stsc30257g00013 306 MobiDBLite consensus disorder prediction 124 155 - -
Stsc30257g00013 306 Pfam Helix-loop-helix DNA-binding domain 156 200 IPR011598 GO:0046983
Stsc30257g00013 306 Gene3D - 146 208 IPR036638 GO:0046983
Stsc30257g00013 306 SMART finulus 157 206 IPR011598 GO:0046983
Stsc30257g00013 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 210 IPR036638 GO:0046983
Stsc30257g00013 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30257g00013 Stsc-Chr30257 114556 118676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30257g00013 77 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 81.356 1.97e-122 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30257g00013 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30257g00013 - - gmx:100797789 438.728