Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30257g00010 ATGGAGAATTGTAGCTATGAGAAAGTAGTAGGCCTGAATCTTGAGGCAACAGAATTAAGGCTGGGTTTGCCAGGTAGTGCTGATGAACATGATGAAAAACATTCATCATCATGCAGTTACTCCTCATCGTCGTCATCGTCAAATGGTGTCGTTAGAACCAACAAGAGATCTTCACCTGAAGAATCCATTCATGAAGATGAGGAAGAGCCCAAAAGCAGCAAGAAAGCCATGATTTCTCATGATAGCTCTAATCCTGATGATGACCAAGACAAAAATGTCCCACCTTCAAAAGCACAAGTAGTAGTGGGGTGGCCACCAATTAGATCATATAGGAAGAACAATGGCATACAACAACAACAAGAGAAGAAGAAGAAGAAGAATGGAGAAGAGGTTATTGATGGGGTTGGTAATGGTATGTATGTGAAAGTGAGCATGGCAGGTGCACCTTACTTGAGGAAGATTGATCTCAAAGTTTACAATAGCTACCAACAATTACTCATGGCCTTGCAAAATATGTTCAAGTGCACTTTTGGTGAATATTCAGAAAGAGAAGGCTACAATGGATCTGAATTTTCTCCAACTTATGAGGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCATTTCTTCCTGCAAGAGGCTAAGAATTGTGAAAGGATCAGAAGCTAAGGGATTGGGTTGTTTATGA 705 0.4071 MENCSYEKVVGLNLEATELRLGLPGSADEHDEKHSSSCSYSSSSSSSNGVVRTNKRSSPEESIHEDEEEPKSSKKAMISHDSSNPDDDQDKNVPPSKAQVVVGWPPIRSYRKNNGIQQQQEKKKKKNGEEVIDGVGNGMYVKVSMAGAPYLRKIDLKVYNSYQQLLMALQNMFKCTFGEYSEREGYNGSEFSPTYEDKDGDWMLVGDVPWNMFISSCKRLRIVKGSEAKGLGCL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30257g00010 234 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 229 IPR003311 GO:0005634|GO:0006355
Stsc30257g00010 234 MobiDBLite consensus disorder prediction 23 129 - -
Stsc30257g00010 234 SUPERFAMILY CAD & PB1 domains 135 222 - -
Stsc30257g00010 234 MobiDBLite consensus disorder prediction 37 56 - -
Stsc30257g00010 234 MobiDBLite consensus disorder prediction 57 93 - -
Stsc30257g00010 234 ProSiteProfiles PB1 domain profile. 138 230 IPR000270 GO:0005515
Stsc30257g00010 234 Gene3D - 134 234 - -
Stsc30257g00010 234 FunFam Auxin-responsive protein 134 234 - -
Stsc30257g00010 234 Pfam AUX/IAA family 16 232 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30257g00010 Stsc-Chr30257 105058 106740 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30257g00010 141 231 B3 DNA Binding Superfamily AT2G46530 36.264 1.13e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc30257g00010 AUX_IAA 1.3e-64 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30257g00010 K14484 - gmx:100792134 263.848