Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30257g00007 ATGGAGAAGATGGTGTTTGAGGAAACTGAGCTGAGGCTTGGGCTGCCAGGGAACAAGAACAATGAAAAGAAGAGGGGATTCTGCGAGACTGAGACTGAATGTGAAACTGAGAGCGAAGAGAAGAAGAATAATAACACTGAGGAGGATGATGATGAAACCACAAACACAACCGTGGATTTGTTGCTGAATCTTTCATCATCATCACCAAAGAAGGAAGCAAACAAGAACAATGGTGGTGCTGTTGCTGAAAACAATTCATCTCCTAATAATAATAATAAGGAGAAGAATCTTCTTCCTTCTGATCCTGCCAAGCCTCCTGCTAAGGCTCAAGTGGTAGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGTTTGCAGTTCAAAAAAGCAGCACAGAAGAGAGTAGTCATCAGAAGATCAATGAGAAGAACAACATGAATATGAATATGAGTGGTAACAACAACAATGGAAGCTTTGTGAAGGTAAGCATGGATGGTGCACCCTACCTTCGCAAAGTGGATTTGAAGATGTATAACAGTTATCCTCAGCTCTCTGATGCCTTAGCCAAAATGTTTAGCTCTTTCACCATTGGAAGTTGTGAATCAGAAGGAATGAAGGATTTCTTCATGAATGAGAGAGCTTTGATGGATGTATTGAACAGTTCTGATTATGTTCCAACTTATGAAGATAAGGATGGAGATTGGATGCTTGTCGGTGATGTTCCTTGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAAGAAGCAATTGGACTGGCACCTAGAGCCATGGAGAAATGCAAGAACAGAAGCTAG 831 0.414 MEKMVFEETELRLGLPGNKNNEKKRGFCETETECETESEEKKNNNTEEDDDETTNTTVDLLLNLSSSSPKKEANKNNGGAVAENNSSPNNNNKEKNLLPSDPAKPPAKAQVVGWPPVRSYRKNMFAVQKSSTEESSHQKINEKNNMNMNMSGNNNNGSFVKVSMDGAPYLRKVDLKMYNSYPQLSDALAKMFSSFTIGSCESEGMKDFFMNERALMDVLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30257g00007 276 MobiDBLite consensus disorder prediction 1 111 - -
Stsc30257g00007 276 Gene3D - 151 269 - -
Stsc30257g00007 276 MobiDBLite consensus disorder prediction 17 49 - -
Stsc30257g00007 276 FunFam Auxin-responsive protein 152 268 - -
Stsc30257g00007 276 SUPERFAMILY CAD & PB1 domains 151 257 - -
Stsc30257g00007 276 ProSiteProfiles PB1 domain profile. 157 258 IPR000270 GO:0005515
Stsc30257g00007 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 263 IPR003311 GO:0005634|GO:0006355
Stsc30257g00007 276 MobiDBLite consensus disorder prediction 56 97 - -
Stsc30257g00007 276 Pfam AUX/IAA family 8 267 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30257g00007 Stsc-Chr30257 67732 72547 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30257g00007 153 261 B3 DNA Binding Superfamily AT3G61830 29.358 8.71e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc30257g00007 AUX_IAA 5.7e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30257g00007 K14484 - gmx:547965 300.056