Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30257g00003 | ATGTCTCTTAAATGTGCTATTGAGTTGGGCATACCTGATACCATTTACAATTATGGCCAACCTATGCCACTCTCAAATCTCATTGATTCATTGAAAATTCATCCATCAAAAACCTCCTTCATCCATCGCTTGATGAGAATCTTGATCCATTCCGACTTCTTCGCTACCGAGAAGGTTGCCGACAAATACCTTGAAGAAGTAGGTTATGTTCTAACTGACTCGTCTATGTTGTTGCTTAAGGACAACCCTTTCAGCATCAGACCTTTCTTGCTTGTTACACTTGACCCAATTTTGACAAATCCATGGCATAAATTGTCCACATGGTTCCAAGATGATAATCCTACACCATTTGAAACCAAACATGGAATAATGTTTTGGAAATACGCAGGTCATGTGCCTAAACTTAACGAACTTTTCAATGATGCCATGGCAAATGATGCTCGATTGGTTAGCGAGTTGTTACTTGATGAAAAGTGCAAGGGTGTGTTTGAGGGGTTAGAATCATTGGTTGATGTTGGTGGAGGCACTGGAACTTTTGCAAAAGCCATTGCCAAATCATTTCCACAGTTAGAGTGCACTGCTCTTGATCTTCCTCATGTTATTGCTGGCTTGGAAGAGAGTGAAAACCTTAAATATGTTGGAGGGGACATGTTTGATGTGATTCCTCCATCTGATGTCATTTTATTGAAGGTAATTTAA | 699 | 0.3977 | MSLKCAIELGIPDTIYNYGQPMPLSNLIDSLKIHPSKTSFIHRLMRILIHSDFFATEKVADKYLEEVGYVLTDSSMLLLKDNPFSIRPFLLVTLDPILTNPWHKLSTWFQDDNPTPFETKHGIMFWKYAGHVPKLNELFNDAMANDARLVSELLLDEKCKGVFEGLESLVDVGGGTGTFAKAIAKSFPQLECTALDLPHVIAGLEESENLKYVGGDMFDVIPPSDVILLKVI | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30257g00003 | 232 | PANTHER | O-METHYLTRANSFERASE | 1 | 232 | IPR016461 | GO:0008168 | |
| Stsc30257g00003 | 232 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 83 | IPR036390 | - | |
| Stsc30257g00003 | 232 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 232 | IPR016461 | GO:0008168 | |
| Stsc30257g00003 | 232 | Pfam | Dimerisation domain | 1 | 48 | IPR012967 | GO:0046983 | |
| Stsc30257g00003 | 232 | Gene3D | Vaccinia Virus protein VP39 | 79 | 232 | IPR029063 | - | |
| Stsc30257g00003 | 232 | Gene3D | - | 1 | 78 | IPR036388 | - | |
| Stsc30257g00003 | 232 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 83 | 230 | IPR029063 | - | |
| Stsc30257g00003 | 232 | Pfam | O-methyltransferase domain | 102 | 232 | IPR001077 | GO:0008171 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30257g00003 | Stsc-Chr30257 | 41836 | 42534 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc30257g00003 | 1 | 232 | Monolignol Biosynthesis Gene Families | AT5G54160 | 31.489 | 1.88e-30 | 114 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30257g00003 | - | K16040 | aip:107609507 | 344.739 |