Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30257g00001 ATGTCTCTTAAATGTGCTGTTGAATTAGGCATACCTGATGTCATTCATAATTATGGCCAACCCATGCCTCTCTCAAAACTCATTGCATCACTACCAATTCACCCATCAAAAACCTCCTCCATCCAACGCTTGATGAGAATCTTGATCCATTCCGGATTCTTCGCCACGAAGAATGTTTCCAACGATGCCAATGAAGTTGAATATGTGTTAACTGATTCGTCCATGCTTCTGCTTAAGGACAATCCCTTAAGTGTGACACCATTCTTGCTTGCCATGCTCGATCCAATATTAACAAAACCATGGCATAAATTGTCCACATGGTTCCAAAGTAAAAACCCCACACCATTTGAAACAGAACATGGGGAAATGTTTTGGGGTTATGCTTGTCATGTTCCTAAACTGAATGAATTTTTCAATGATGCCATGGCAAGTGATGCCCGATTGGTTAGCAAGTTGTTACTTGATTACAAGTACAAAGGGGTGTTTGAGGGTTTGGAATCGTTGATTGATGTTGGTGGAGGCACTGGAACTCTTGCAAAAGCCATTGCCAAATCATTACCACAGTTAGAGTGCACTGTATTTGATCTCCCACATGTTGTTGCTGGCTTGGAAGGAAGTGAGAACCTTAAATATATAGCAGGGAACATGTTTGAGGTCATTCCTCCATCGGATGCTATTTTATTGAAGTGGATTTTACATGACTGGAATGATGAAGAATGTTTGATAATATTGAAAAATTGCAAGGAAGCAATCATGAGCAAAGGCAATGGAGGGAAGGTTATTATCATAGACATGGTAATAATGGAAGAAGATAAGAAAAAAGGGGATGATGAATCTGTTGAAACACAATTGTTCTTTGACATGCTGATGATGGTGTTGGTCACAGGAAAAGAGAGAAATGAAAAAGAATGGGCCAAATTGATCTTTTCTGCTGGATTTAGTAACTATAAAATAACTCCAATTTTTGGATTAAGGTCCCTCATTGAGATATATCCATAG 999 0.3894 MSLKCAVELGIPDVIHNYGQPMPLSKLIASLPIHPSKTSSIQRLMRILIHSGFFATKNVSNDANEVEYVLTDSSMLLLKDNPLSVTPFLLAMLDPILTKPWHKLSTWFQSKNPTPFETEHGEMFWGYACHVPKLNEFFNDAMASDARLVSKLLLDYKYKGVFEGLESLIDVGGGTGTLAKAIAKSLPQLECTVFDLPHVVAGLEGSENLKYIAGNMFEVIPPSDAILLKWILHDWNDEECLIILKNCKEAIMSKGNGGKVIIIDMVIMEEDKKKGDDESVETQLFFDMLMMVLVTGKERNEKEWAKLIFSAGFSNYKITPIFGLRSLIEIYP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30257g00001 332 PIRSF O-mtase 1 332 IPR016461 GO:0008168
Stsc30257g00001 332 Gene3D - 1 77 IPR036388 -
Stsc30257g00001 332 Gene3D Vaccinia Virus protein VP39 78 332 IPR029063 -
Stsc30257g00001 332 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 332 IPR016461 GO:0008168
Stsc30257g00001 332 Pfam O-methyltransferase domain 101 314 IPR001077 GO:0008171
Stsc30257g00001 332 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 82 330 IPR029063 -
Stsc30257g00001 332 SUPERFAMILY "Winged helix" DNA-binding domain 1 82 IPR036390 -
Stsc30257g00001 332 PANTHER O-METHYLTRANSFERASE 1 317 IPR016461 GO:0008168
Stsc30257g00001 332 FunFam O-methyltransferase ZRP4 79 332 - -
Stsc30257g00001 332 Pfam Dimerisation domain 1 48 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30257g00001 Stsc-Chr30257 17884 19249 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30257g00001 1 330 Monolignol Biosynthesis Gene Families AT5G54160 32.840 2.63e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30257g00001 - K16040 aip:107609507 513.457