Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30256g00013 ATGGAGATAGAGGCGAGTAAAGCTTCAGGGAATAATAGTAATAATAACAATGGAGGAGGAGTGGTGGTTCCGGCGTTGAGTCCTCTGAGTGAGACTCTTTGGAGGGAGAAGACCGACACGGAGTTCATCGGAGACGTATCGGCCAGGCTGACGTGGAAGGATCTGACGGTTATGGTCACTCTCGGCAACGGAGAGACGCAGAATGTTCTAGAAGGCTTAACCGGTTACGCTGAGCCTGGAACCTTCACCGCACTCATGGGCCCCTCCGGCTCCGGAAAATCCACTCTCCTTGATGCTCTTTCGAGTCGCCTCGCCGCCAATGCCTTCCTCTCGGGCACCATCCTCCTCAACGGCCGCAAAGCCAAGCTCTCTTTTGGCACCGCGGCATACGTGACACAAGATGACAACTTAATTGGAACCCTAACAGTACGAGAGACGATATCATATTCGGCTCGGTTGAGGCTGCCGGATAAGATGGCATGGTCAGACAAAAGGGCACTGGTGGAGAGCACGATAGTGGCGATGGGGCTTCAAGATTGTGCAGACACAGTGATAGGGAACTGGCACCTGCGTGGGATTAGTGGTGGGGAGAAGAGAAGGGTTAGCATTGCTTTGGAAATATTGATGAGACCTCGCTTGCTCTTCCTTGATGAACCTACTAGTGGCTTAGACAGTGCTTCAGCTTTCTTTGTGACTCAAACACTGCGTGCATTGGCAAGAGATGGAAGAACAGTGATAGCTTCCATTCATCAACCTAGCAGTGAAGTTTTTGAACTATTTGATCAATTGTACTTGCTCTCTGGTGGCAAAACTGTTTACTTTGGCCAAGCTTCTGAGGCATATGAGTTCTTTGCACAAGCTGGTTTTCCATGCCCTGCTTTGAGGAATCCATCTGATCATTTCCTTAGATGCATCAACTCTGACTTTGACAAAGTCAAATCAACTCTTAAGGGTTCCATGAAACTCAGGTTTGAGGGAAGTGATGATCCCTTGGATAAGATCACTACTGCTGAAGCTATCAGAACTCTTATTGATTACTACCGCACTTCTCAGCATTCTTATGCTGCAATACAGAAAGTGGATGAGATATCCAAAGTTAAGGGAACAGTGCTTGATGCAGGAGGAAGCCAGGCAAGCTTCTTAATGCAGTCTTACACACTAACAAAGCGCTCCTTCATCAACATGTCTAGGGACTTTGGTTACTATTGGCTTAGGCTTGTGATCTACATTGTGGTCACTATCTGCATTGGAACCATTTACTTGAACGTGGGAACAGCCTACAATTCAATTCTGGCCAGAGGCTCATGTGCATCATTTGTGTTTGGTTTTGTCACATTCATGTCCATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAAAGACTGAATGGCCACTATGGTGTGACTGCATTTGTGATAAGCAACACATTATCTGCAATGCCATTCCTGATACTAATAACTTTTCTGTCTGGAACAATCTGTTACTTCATGGTTAGGCTTCACCCTGGTTTTTGGCATTACCTCTTCTTTGTGCTATGCCTTTATGCAAGTGTCACAGTTGTTGAGAGCTTAATGATGGCAATAGCTAGCATTGTCCCTAACTTCCTCATGGGCATCATAATTGGAGCAGGGATTCAGGGCATATTCATGCTTGTGTCTGGCTACTTTAGGCTCCCACATGATATTCCGAAGCCGGTCTGGCGCTATCCGATGTCATACATCAGTTTCCACTTTTGGGCACTACAAGGACAATACCAGAATGATCTTACAGGGTTGATATTCAACAACCAGACGCCGGATCTTCCAAAGATACCGGGTGAATACATCCTGGAGAATGTTTTCCAGATTGATGTGAACAGATCAAAGTGGACAGACTTAAGTGTGATCTTCAGCATGATTATAATCTACCGCATAATTTTCTTCATAATGATCAAGATCAATGAGGATGTGACACCATGGGTTAGAGGGTACATAGCTAGGAGAAGGATGCAGCAGAAGAGTGGAGCTCAGAACACAACTATTGCACCTGATGTTCTTACTCAGTCACCATCTCTTAGAGCCTATGTTTCTACTCAAAGAAGAAATGGCACATCCAAAAGTTAA 2118 0.4556 MEIEASKASGNNSNNNNGGGVVVPALSPLSETLWREKTDTEFIGDVSARLTWKDLTVMVTLGNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMAWSDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKSTLKGSMKLRFEGSDDPLDKITTAEAIRTLIDYYRTSQHSYAAIQKVDEISKVKGTVLDAGGSQASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTAYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLTGLIFNNQTPDLPKIPGEYILENVFQIDVNRSKWTDLSVIFSMIIIYRIIFFIMIKINEDVTPWVRGYIARRRMQQKSGAQNTTIAPDVLTQSPSLRAYVSTQRRNGTSKS 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30256g00013 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 287 IPR027417 -
Stsc30256g00013 705 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30256g00013 705 Pfam ABC-2 type transporter 383 589 IPR013525 GO:0016020|GO:0140359
Stsc30256g00013 705 CDD ABCG_EPDR 47 275 - -
Stsc30256g00013 705 FunFam ABC transporter G family member 11 44 287 - -
Stsc30256g00013 705 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 38 671 - -
Stsc30256g00013 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 50 293 IPR003439 GO:0005524
Stsc30256g00013 705 Gene3D - 43 288 IPR027417 -
Stsc30256g00013 705 Pfam ABC transporter 72 221 IPR003439 GO:0005524
Stsc30256g00013 705 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524|GO:0016887
Stsc30256g00013 705 SMART AAA_5 79 250 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30256g00013 Stsc-Chr30256 57583 62621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30256g00013 80 254 Calmodulin-binding Proteins AT2G36910 33.871 1.10e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30256g00013 K05681 - gmx:100803731 1270.37