Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30256g00010 ATGGATCTGCAATCTCCCTTCTCCTCTACCTATCGATGGAAATACGAGGTCTTTATTAGTTTCAGAGGCCAAGATACTCGTTATGGTTTCACTGGCAACCTCTACAAATCTCTCCGTAACAAAGGAATCCACACCTTCTTTGACGATGACAAGCTTCAAAGTGGAGACGAAATCACATCTGCACTTGTCAACGCAATTCAAAAACTCCAGAACGAACTCCTCCATGTCCTTCTCTGCATCAAGGGAAATAATCGCTTGGTTTTGCCGATCTTCTATGAGGTGGATCCTTCTGATGTTCGCCATCTAAAAGAGAATTTTGGAGAGGCAATGGCTAAGCATGAGGAGAGATGCAAGAATGACTTGAACAGAGTGCAAAAGTGGAAGGAGGCTTTGAATCAAGTAGCTAATTTGTCAGGCTACCATTTCAATAAAGGAAAGATTAGGCGTGTACCTTTGCCTGTTGCTGATTACCCTGTTGGACTAGAGTCTCGAGTGTCCAAAGTAATTCCACTTCTTGAAATGGACTCCACTGATCGAGTTTGCCTGGTGGGGATACATGGTATTGGTGGAATTGGTAAAACAACTCTTGCTCTCGCAATTCATAACTCAATTGCTGACCATTTTGAGGGTCTGTGTTTTCTTGCAAATGTGAGAGAGAATTCAAATAAATATGGGTTGACACATCTTCAAAATATCCTTCTCTCTGAGATATTGGGAAATGAGGAAGTTAAGGTAGCTAGTGTTCAACAAGGAACTTCCATAATCCAGCAAAGATTTTCACAAATGAAAGTTCTTTTGATTCTAGATGATGTTGATGATCTCAAGCAGCTACAGGCTATTGCTGGAAAACTTGATTGGTTTGGTCCTGGTAGCAGAGTTATTATTACAACACAGGACACACAATTGCTAAAATGCCATGGTGTTAAAAAGATGCATGAGGTAGAGGGGTTAAATGAGGCAGAGTCTTCTCAGTTGCTTGTTAAGAAAGCTTTTAAAAATGGTGAGGTTAGCCTAAGTTATGCAGGTGTTTTAAATCGTGCAATAACTTATGCCTCTGGACATCCATTTGCTTTGGAAATAGTAGGTTCCAATTTGTTTGAAAAAGAAGTAGAAGATTGGGAATCTGCATTGCAACACTATGAAAGAATTCTTAATGGGAAGATCCAACAAATACTTAAAATAAGTTATGATGCTTTGGAGGAAAATGAGCAGAATATATTTCTTGATATCACTTGTTGCTTTAAAGGATATAAGTTGAAAGAAATTGGAGATATACTTGATGCTCGTTACGGAGGAAAAGTGAGATATCATATTCGACGGTTGGTTGATAAATCTCTCATAAAGGTTAATAAGATTTGGCATCAGGTAACATTTCATGATTTGATAGAGGACATGGGAAAATAA 1404 0.3875 MDLQSPFSSTYRWKYEVFISFRGQDTRYGFTGNLYKSLRNKGIHTFFDDDKLQSGDEITSALVNAIQKLQNELLHVLLCIKGNNRLVLPIFYEVDPSDVRHLKENFGEAMAKHEERCKNDLNRVQKWKEALNQVANLSGYHFNKGKIRRVPLPVADYPVGLESRVSKVIPLLEMDSTDRVCLVGIHGIGGIGKTTLALAIHNSIADHFEGLCFLANVRENSNKYGLTHLQNILLSEILGNEEVKVASVQQGTSIIQQRFSQMKVLLILDDVDDLKQLQAIAGKLDWFGPGSRVIITTQDTQLLKCHGVKKMHEVEGLNEAESSQLLVKKAFKNGEVSLSYAGVLNRAITYASGHPFALEIVGSNLFEKEVEDWESALQHYERILNGKIQQILKISYDALEENEQNIFLDITCCFKGYKLKEIGDILDARYGGKVRYHIRRLVDKSLIKVNKIWHQVTFHDLIEDMGK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30256g00010 467 Gene3D - 146 312 IPR027417 -
Stsc30256g00010 467 Gene3D - 11 145 IPR035897 -
Stsc30256g00010 467 ProSiteProfiles TIR domain profile. 13 161 IPR000157 GO:0007165
Stsc30256g00010 467 Pfam TIR domain 71 133 IPR000157 GO:0007165
Stsc30256g00010 467 Pfam TIR domain 14 68 IPR000157 GO:0007165
Stsc30256g00010 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 410 IPR027417 -
Stsc30256g00010 467 Gene3D - 316 405 IPR042197 -
Stsc30256g00010 467 SUPERFAMILY "Winged helix" DNA-binding domain 387 467 IPR036390 -
Stsc30256g00010 467 Coils Coil 110 130 - -
Stsc30256g00010 467 SMART till_3 14 137 IPR000157 GO:0007165
Stsc30256g00010 467 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 140 IPR035897 -
Stsc30256g00010 467 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 467 IPR044974 GO:0006952
Stsc30256g00010 467 Pfam NB-ARC domain 163 399 IPR002182 GO:0043531
Stsc30256g00010 467 PRINTS Disease resistance protein signature 182 197 - -
Stsc30256g00010 467 PRINTS Disease resistance protein signature 351 365 - -
Stsc30256g00010 467 PRINTS Disease resistance protein signature 258 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30256g00010 Stsc-Chr30256 33478 35099 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30256g00010 159 467 WRKY Transcription Factor Family AT5G45050 31.613 4.89e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30256g00010 - - aip:110272157 617.846