LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30256g00007	ATGGATCTACAATCTCCCTTCTCTTCTATCCATTCCTTCAGCTACAACTATCCATGGAAATACGATGTGTTTATTAGTTTCAGAGGTGAAGATACTCGTTATGGTTTCACGGGCAACCTCTACAAAGCTCTCTGTGACAAAGGAATCCACACCTTCTTTGATGATAATGAACTTCAAAGTGGAGAGGAAATCACACCTGCACTTCTCAAGGCAATTCAAGAGTCAAGGATTGCTATCATTGTCCTCTCTCCTGACTATGCTGCTTCCTCTTTTTGCTTAGATGAGCTTGTTAAGGTCCTTGATTGCATCAAGGATACGAATCGGTTGGTATTGCCTGTTTTCTATGAAGTGGATCCTTCTGATGTCCGCCATCAAAGAAACAGTTACGGAGAAGCAATGGCTAAGCATGAGAAGAGATTCAAGGATGACTTGAACAAAGTGCAAAAATGGAAGGAGGCTCTGCATCAAGTAGCTAATTTGTCAGGCTATCATTTCAAATACGGGGATGGATATGAACACATGTTTATCGGAAATATTGTGGAAAAGATTTCAAGAAAGATTAAGCGTGTACCTTTGCCTGTTGCTGATTACCCTGTTGGACTAGAGTCTCGAGTGTCAAAAGTAATTCCACTTATGGAAATGGATTCTACTGATCGAGTTCACATGTTGGGGATACATGGAATTGGTGGAATAGGTAAAACAACACTTGCTCTAGCAATTTATAATTTGATTGCTGACCATTTTGACGGTGTGTGCTTTCTTGCAAATGTGAGGGACAATTCAAATAAATATGGGTTGACACATCTTCAAAATATCCTTCTCTCTGAGATATTAGGAAATGAGGAAGTTAAGGTAGCTAGTGTTCAACAAGGAACTTCCATAATCCAACGAAGGCTTTCTCGAAAGAAAGTTCTTTTGATTCTAGATGATGTAGATGATCACAAGCAGCTACAGGCTATTGCTGGAAAACTTCATTGGTTTGGTGGTGGTAGCAGAGTTATTATTACAACACGGGACACACAATTGCTAAAATGTCATGGTGTTGAAAATATGCATGAGGTACAGGGGTTGAATAAGAAAGAGTCATATCAGTTGCTTATTAAAAAAGCTTTTAAAAATGGTGATGCTAGCCCAAGTTATTATGCGGATGTTTTAAACCGTGTGATAACTTATGCTTCTGGACATCCATTAGCTTTGGAAATAGTAGGTTCCAATTTGTTTGGAAAGGAAGTAGAAGATTGGGAATCTGCATTACAACAGTATGAAAGAATTCCTAATGGGAAGATCCAAAAAATACTTAAAATAAGTTATGATGCTTTGGAGGAAAATGAGCAGAATATCTTTCTTGATATCACTTGTTGCTTTAAAAGATATAACTTGACACAAATTAGAGATATATTTCTTGCACATTATGGAGATGACATGATATATCATATTCAACAGTTGGTTGATAAATCTCTCATAAAGATTAATGAGCCTTGTCAGCTATTGACATTTCATGATTTGATAGAGGACATGGGAAAAGAAATTGTTCGACAAGAATCACCGAAAGTGGTAGGACAGCGTAGTAGGTTATGGTTTCATGAAGATATAGTTCAAGTTTTGGAAGAAAATCAAGGGACTAGCGCAGTTGAGATCATATATTTGGAATTTCCCTTGTCAAAAATGGAGGAAAAGGAGAAGAATAAAGATGTACAAGTGGTATGGGATGGAACAGCCTTTAAGAAAATGAAAAATCTGAAAACACTTATTGTAAAAAATGGTTGTTTTTCCAAAGGTCCCGTACATCTTCCAAATAGTTTAAGAGTAATGGAATGGTGGGAATATCCTTCAAAATATTTTCCATCTGATTTTCATCCGAAGAAATTGTCCATCCTCAAGTTACCCAATTCACTCTTTACGTCTTGCAAGTTGGATAACTTATCTAAGAAGTTGGTGGCCTTAAAAGTATTGAATTTTGACAACAGCAATTTTTTGGAAGAGATAGGCGATGTATCTAATCTTCCAACTTTAGAAGAATTATCATTCAGAGGTTGTAAAAATTTAACTAGAATTCACAGTTCCATTGGTTTTCTTGGTAAACTTAAAACGTTGGATGCTGAAAGGTGCCAGAAGCTTAGGAGTTTTCCATCTATGAATTTGCCCTCACTCAAAATACTTACGTTATCTCATTGCTCTAGTCTTGAGAAATTTCCTGAAATAGTAGGAAAGATGGAAAATGTGGAAATGCTTCTTTTGGATGGCACGAACATAAGAGACTTGCCATTGTCATTTCGAAACCTTTCTAAGTTATGTAATCTGATTATGTTGGGCAGTAGAATTGAAAGGATACCAAGTGTGATTTTCATGATGCCAAAGTTGTCTATGTTTTTTATAGATGGAATTGGAGGTAATAGGTTAGAATCACAAAAGCAGGAGGAAGGAATAGTGACCTCTCTCAGCTCTTCAAGTCTGCCTTTTCTTGATATCTATTTGTTGAGGCTGTCGCTGTCAGATGACTTTTTGCCGCAACAGCTACCAAGGTTTCCCAATTTAAAAACATTATGTCTGGCACACTGTGATATCACATTCATTCCCGAATGCATCCAAGAATTACAGTTTCTATCTCGGCTGCAAGTGGATAGTTGCACGTTTCTTCAAGAGATTAGAGGGATTCCACCAAACCTAGAAGATTTCTCAGCATTATACTGCGAATCCCTGACTCCCTCCTCTGCAATCATGTTACTCAATCAGGAATTGCACGACAAGGGAAACACACATTTTGTTATGCCACGAGCATGTGCATGCATTCCAAGTTGGTTTGAGCACTGCAGCAAAATAACTAATTCTATTTCTTTCTGGTTTCGTGGCAAATTCCCTGCCAAATCTCTTTGCCTTGCAATTCTACTGGATTATTCGTGCCATGGGGTAAAGCCCATCGTGACCATCAATGGCAAGAAAGTTTCCTTTGGCAGTAGGGGAACCACTGTGGAGCGATTATTTATTTTTGATCTGTGGAAGACAAATCACGACGATGATTTGGATAAATTACTTTTTCAAAGCCAAGAATGGAATCATGCGGAGGTTTCATGTGAAGTAACTGCAGCAGAGATGGGAATACACATATTGAAGCAAAAGAGTAGTAGTATCATGGAAGATATTCGATTCACCCATCCTTACAAAAAGAGAAAAAGAGACGGGCATGATTCTCTCAATAGTATTATTGCAAGACTGCCTTCAGCTTCGCAGAACATGATGGAATGTCAGAATCCTCTTGATTGTAATGAAGCAACGTCACATACTGTTTATTTATGA	3294	0.378	MDLQSPFSSIHSFSYNYPWKYDVFISFRGEDTRYGFTGNLYKALCDKGIHTFFDDNELQSGEEITPALLKAIQESRIAIIVLSPDYAASSFCLDELVKVLDCIKDTNRLVLPVFYEVDPSDVRHQRNSYGEAMAKHEKRFKDDLNKVQKWKEALHQVANLSGYHFKYGDGYEHMFIGNIVEKISRKIKRVPLPVADYPVGLESRVSKVIPLMEMDSTDRVHMLGIHGIGGIGKTTLALAIYNLIADHFDGVCFLANVRDNSNKYGLTHLQNILLSEILGNEEVKVASVQQGTSIIQRRLSRKKVLLILDDVDDHKQLQAIAGKLHWFGGGSRVIITTRDTQLLKCHGVENMHEVQGLNKKESYQLLIKKAFKNGDASPSYYADVLNRVITYASGHPLALEIVGSNLFGKEVEDWESALQQYERIPNGKIQKILKISYDALEENEQNIFLDITCCFKRYNLTQIRDIFLAHYGDDMIYHIQQLVDKSLIKINEPCQLLTFHDLIEDMGKEIVRQESPKVVGQRSRLWFHEDIVQVLEENQGTSAVEIIYLEFPLSKMEEKEKNKDVQVVWDGTAFKKMKNLKTLIVKNGCFSKGPVHLPNSLRVMEWWEYPSKYFPSDFHPKKLSILKLPNSLFTSCKLDNLSKKLVALKVLNFDNSNFLEEIGDVSNLPTLEELSFRGCKNLTRIHSSIGFLGKLKTLDAERCQKLRSFPSMNLPSLKILTLSHCSSLEKFPEIVGKMENVEMLLLDGTNIRDLPLSFRNLSKLCNLIMLGSRIERIPSVIFMMPKLSMFFIDGIGGNRLESQKQEEGIVTSLSSSSLPFLDIYLLRLSLSDDFLPQQLPRFPNLKTLCLAHCDITFIPECIQELQFLSRLQVDSCTFLQEIRGIPPNLEDFSALYCESLTPSSAIMLLNQELHDKGNTHFVMPRACACIPSWFEHCSKITNSISFWFRGKFPAKSLCLAILLDYSCHGVKPIVTINGKKVSFGSRGTTVERLFIFDLWKTNHDDDLDKLLFQSQEWNHAEVSCEVTAAEMGIHILKQKSSSIMEDIRFTHPYKKRKRDGHDSLNSIIARLPSASQNMMECQNPLDCNEATSHTVYL	1097

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30256g00007	1097	Gene3D	-	356	441	IPR042197	-
	Stsc30256g00007	1097	SUPERFAMILY	"Winged helix" DNA-binding domain	428	536	IPR036390	-
	Stsc30256g00007	1097	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	451	IPR027417	-
	Stsc30256g00007	1097	PRINTS	Disease resistance protein signature	298	312	-	-
	Stsc30256g00007	1097	PRINTS	Disease resistance protein signature	712	728	-	-
	Stsc30256g00007	1097	PRINTS	Disease resistance protein signature	222	237	-	-
	Stsc30256g00007	1097	PRINTS	Disease resistance protein signature	392	406	-	-
	Stsc30256g00007	1097	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	189	-	-
	Stsc30256g00007	1097	SUPERFAMILY	L domain-like	569	914	-	-
	Stsc30256g00007	1097	Gene3D	Ribonuclease Inhibitor	561	907	IPR032675	-
	Stsc30256g00007	1097	SMART	AAA_5	219	346	IPR003593	GO:0016887
	Stsc30256g00007	1097	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	163	IPR035897	-
	Stsc30256g00007	1097	Gene3D	-	17	184	IPR035897	-
	Stsc30256g00007	1097	Pfam	TIR domain	20	188	IPR000157	GO:0007165
	Stsc30256g00007	1097	ProSiteProfiles	TIR domain profile.	19	187	IPR000157	GO:0007165
	Stsc30256g00007	1097	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	734	IPR044974	GO:0006952
	Stsc30256g00007	1097	SMART	till_3	20	160	IPR000157	GO:0007165
	Stsc30256g00007	1097	Pfam	NB-ARC domain	207	441	IPR002182	GO:0043531
	Stsc30256g00007	1097	Gene3D	-	185	350	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30256g00007	Stsc-Chr30256	25467	29757	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30256g00007	21	794	WRKY Transcription Factor Family	AT4G12020	30.587	6.25e-80	286

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30256g00007	-		-	aip:107644584	1234.17