Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30256g00004 ATGGCATGTGTAGCATCAGCAACCACCTCCTCCTCCTACTCTTCTTTCACTACTACTTTTCCATTCGCCTATGATGCTTTTCTCAGCTTCAGGGGTGAGGATACCCGTTCTGGCTTCACTGGCTATCTCTATTACACTCTCACAAATAGGGGAATCAACACTTTCATTGATGATGAAAAGCTTGGGAGAGGGAAGGAGATCATATCCTCACTTTTCACTGCAATCGAAAAGTCCAGGATCGCAATCGTCGTGCTTTCGAAGAATTATGCTTCTTCTTCATTTTGTTTGGATGAACTTGTCAAGATTCTTGAGTACGTTAAGGGAAAGGGCAGGTTGATTATTCCCGTTTTCTATGACGTGGATCCTTCTGATGTGCGAAAGCAGACAGGGACTTATGGAGAGGCATTGGCTGTGCATGAGAACAAGTTCAAGTTGAAGGCTGATAAGTTGGAGATGCTGAAGAGATGGAGAATGGCTTTGGAGAAAATAGCAGACTTGTCTGGTTATCATTTCAAACACGGGGATGGATATGAACACAAGTTTGTTGCCAAGATTGTTGAACATGTATCAATAGAGATTAAACGTGCTACTTTACCTATTGTAGATCACCCAATTGGATTGGATTCCCAAGTGGAAAATGTAGTTTCTCTTTTGAATGTTGGGTCTAATGATGGAGTTCGTGTGCTGGGGATTCATGGAATCGGTGGAATAGGTAAAACAACACTTGCTGTGGCAGTGTATAATTGGCTTGTCAATCATTTTGCAGTTTTATCTTTTGACAGTATATGTTTCCATGAAAATATAAGAGAGAATTCAGATAAACATGGATTACAACATCTGCAAAAGACCCTGTTGTTTGAACTAGTTGGAAAAAATAAAGTTGCACTGACTAGTGTTAGAGAAGGAATATCAATGTTAAAGCAAAGACTCCAACAAAAGAAAGTTTTTTTGATTCTAGACGATGTTGACCAACAAGAGCAGTTAGACGCACTTGCTGGAAAACTTGATTGGTTTAGTCCTGGTAGTAGAGTTATCATTACAACTCGAGACACGAGTTTACTATCAAGGTATGGGAATACAATAATGTATGAGTTAGATAAGTTGAATGATAAAGATTCTCTAGAATTGCTCAGTTTGAAAGCTTTAAAAACTAACAAAGTTGATCAAAGTCACTTGGACATCTTGAGCAATGTGGTAACTTATGCTTCTGGCCTACCATTGGCTTTGGAAGTCATAGGATCTAACTTTGTGGGCAAAAGTATAGATCAGTGGAAATCTGCTTTAGATCAATACAGAAGAATTCCCAATAAAAAGATACAAACTGTGCTTAAGGTAAGCTTTGATGGATTGGAGGAATTTGAGAAGGAAATTTTTCTTGATATTTCTTGTTGTTTTAAAGGATGTGAATTGACAAATGTCAAAAGGATACTTTGTGCTCATCATAATGTTGACTCCTTGGACTATGGCCTTAAAGTATTGGTTGAAAAATCACTAATAAAAATTGATGCATATCGTGGAGTAATATTGCATGCCCTCATTCAAGACATGGGTAGAGAAATTGTGCGTCGAGAATCACCAAAAAAGCCTGGGAAGCGTAGTCGATTATGGCTCCTTGAAGATATAGTTCAAGTTTTTGAAATGAATATGGGGTCTGACAAAATTGAAATGATACATATGGATTTTCCCAACTCTGAAAAAGAAATAAGATGGGATGGAGAGGCTTTCAAGAAAATGGGAAATCTCAGAACACTGTTTATTAGGCATACTTATATCTCTCAAGGTCCCAAGTATCTTCCAAATTGTTTAAGAGTGTTGATTTGGGAGGAATATCCTTCAGCTTCTTTACCACTTGATTTTCATCCGGAGGGACTTGTCGTATTCCAATTACCTAGCAGCAGTATAGGGTCAGTCAGGTTTCTTGAAAAGCGAAAGTACATGAGCTTGACGGTCATAACTCTTGATGGTTCTAAGTTAGAAGAGCTACCTGATATATCTGGAGTCCAAAATTTAGTAAAGCTATCATTGAATAATTGCGTGAATTTAATTAAAATTCACGAATCAATTGGATTCTTAGATAAACTTAGCCTATTGAGTGCTCAAGGCTGCAGGATGATCAAGAGATTTCCGTCTATCAAGTTGAACAATCTTGAATATCTCCGTCTTTCAGGGTGCTCTAGTCTTGAACATTTTCCAAAAATGTTAGGAAAATTAAAGCATATACTAGAAATTTATTCGGATGATACTCTAATAAAAGAATTGCCATCTTCTATTAAAAGGTTTTGTTTGCTTAGCCACTCAAGTATAGTAAAGCATACAGCAAGTTGTCCACCAGGCCGAATTTTCATGTTTCCATATGAAGAGAAAGTGAGTTTTGAGAGGTCTGAAGTTGAAGAAGAACAAGGGAGTTCAATGGCACCTTTGGAGGAAAAACATTCTGCCTTCAAATATGAACCTTTCAAAGCAGATCTTACCCGTTTCAGCAACGTGGAAGACTTAGACATGTCAGAGCATAATTTCACAGTTCTTAATGAAAGCCTCAAAGAACTTTGCTCCTTGAAGTCACTTACTTTGGATGGCTGCTTAGAACTTCGAGAAATTAAAGGGATTCCACCAAACATAAAGCGTTTATCTGCCAGAAACTGTGTATCCTTGTCACACGCCAGCAAAAACATGTTACTTAACAAGGAATTACATGAGGATGGAGGCAAGGATTTTATTCTTCCAAGTAGTAGCATCCCAAAGTGGGTGGAGCATAGTAGCAACAATGATTCAATTTCTTTCTGGTTTCGCAGCAAGCTTCCTGAAATCTCTTTATGTGTTGTTGTTGAGCCTCCGGTTGTTTTTTCGCGTACACGCATTTGTCCGGAGTTCATCATCAACAACAGCGTATGTACACCAGAACATATTGAATCAGTGGAGACATCCGGTCAATTAGAAGATCATATATTTATCATTGATCCAAAATTGATGAAGTCCAAAGTGGATGAAGTGATTTTAGAAAATGAGTGGAATCGTGTTGTGTGTACAGTTAAGTCTTTTGGCCTCCAAAGGGGACCGGCTATCAAGAAACTTGGAATCCATTTTCACAAAGATAGAAGTAGCATGGAGAATATTCAATTTATTGATCCACCGTTGCATAAAGAAGAGTTGAACATGGGAAATTTCCAGGTAAACTTGCAACAACAAATGTATACGGCGTCACATGAAAGGAGGCTTTCATTGGATCTTCCTTTAGGAATGAGTTCATTGAATGATAATGTGAATAGGGAATCAAATTCCAGTGTCCAAGACCCCTGTGTTGATGATTTATGTACACTAAGGTTGGGCCTGGAATACATTGACGACCTGCCTTGTCATTCATCTTCAGAAAGGGATTATGATTCAGATTCAACATTGTTAATCTTAGCAAGTAATAATACTGCTAACGATGGAGAAAGGGATGATCATTTAAGGATGAATAGCATGCAGCTATCCCTGCGCCCATGTTGGCAAGAACCTTTGGACTCTCGGAAACAAGGATCAAATTCGGTGCAAATAACATCCACAAGCTACAACATCAGAGGTGCAGAGACAGATGAGTCTTTCAGAAATCAAGTTGATGTAAGCCAAGATGACGATGCTGATGATTTAGAAATGGAAGGATTCTATGCTTCTCTTGATGCTGAGACAAATGTTCTTTCAGTTTCTCCAAATGAAGAGACCAAGGAAGCACTGAAAATAGTACTAGACTTCTTCACCAATAATAATGATGATGCTTCAGTGTTCTTGGATGCAGAACATTGCAGCACCATGAAAACCAGCTTAGATTATCTCTCCAGTTTGTCTGCTAATGATGGTTTATCAGAAGCGATGCGAGCATTGATATCTGAAGCTTCAACTGTGTTTGCACATTGTAGTAGTAGCTACATTGAAGCAAACATGAAAGTTGAGTCTACTGCTCCAGAACTGTTGAGAGCTGATAAATTAAAAGCTGAGCTTGAACATAACAAGAATCAGTTCAATGATACGGTGGCATCAGAAAAAGAGCTGCAGCAGAAGTTGGCGTGTTTGGAGGAAATGAAAGAGGAGCTAGAAAAGCAAATCAGAACTGCTAATGCTAACATCATGGCTTCTCGAAAAGAGCAGAACATGACACGAAAGAGAAAGAGAGATATCTATGTGGAAGGAAAGGCACTCAAAGCTCAAATGGATGTGTTGAACCAGAAAGTACCACATTTGCAGCATGAGCATGATTTGGCAAAGGTAAACCAGGAAAAAATCAAAGCTGAATGGTCAGAGTTTGGAGAAAAATTTAGAAAGACTGTTGTAGAGTGA 4314 0.3853 MACVASATTSSSYSSFTTTFPFAYDAFLSFRGEDTRSGFTGYLYYTLTNRGINTFIDDEKLGRGKEIISSLFTAIEKSRIAIVVLSKNYASSSFCLDELVKILEYVKGKGRLIIPVFYDVDPSDVRKQTGTYGEALAVHENKFKLKADKLEMLKRWRMALEKIADLSGYHFKHGDGYEHKFVAKIVEHVSIEIKRATLPIVDHPIGLDSQVENVVSLLNVGSNDGVRVLGIHGIGGIGKTTLAVAVYNWLVNHFAVLSFDSICFHENIRENSDKHGLQHLQKTLLFELVGKNKVALTSVREGISMLKQRLQQKKVFLILDDVDQQEQLDALAGKLDWFSPGSRVIITTRDTSLLSRYGNTIMYELDKLNDKDSLELLSLKALKTNKVDQSHLDILSNVVTYASGLPLALEVIGSNFVGKSIDQWKSALDQYRRIPNKKIQTVLKVSFDGLEEFEKEIFLDISCCFKGCELTNVKRILCAHHNVDSLDYGLKVLVEKSLIKIDAYRGVILHALIQDMGREIVRRESPKKPGKRSRLWLLEDIVQVFEMNMGSDKIEMIHMDFPNSEKEIRWDGEAFKKMGNLRTLFIRHTYISQGPKYLPNCLRVLIWEEYPSASLPLDFHPEGLVVFQLPSSSIGSVRFLEKRKYMSLTVITLDGSKLEELPDISGVQNLVKLSLNNCVNLIKIHESIGFLDKLSLLSAQGCRMIKRFPSIKLNNLEYLRLSGCSSLEHFPKMLGKLKHILEIYSDDTLIKELPSSIKRFCLLSHSSIVKHTASCPPGRIFMFPYEEKVSFERSEVEEEQGSSMAPLEEKHSAFKYEPFKADLTRFSNVEDLDMSEHNFTVLNESLKELCSLKSLTLDGCLELREIKGIPPNIKRLSARNCVSLSHASKNMLLNKELHEDGGKDFILPSSSIPKWVEHSSNNDSISFWFRSKLPEISLCVVVEPPVVFSRTRICPEFIINNSVCTPEHIESVETSGQLEDHIFIIDPKLMKSKVDEVILENEWNRVVCTVKSFGLQRGPAIKKLGIHFHKDRSSMENIQFIDPPLHKEELNMGNFQVNLQQQMYTASHERRLSLDLPLGMSSLNDNVNRESNSSVQDPCVDDLCTLRLGLEYIDDLPCHSSSERDYDSDSTLLILASNNTANDGERDDHLRMNSMQLSLRPCWQEPLDSRKQGSNSVQITSTSYNIRGAETDESFRNQVDVSQDDDADDLEMEGFYASLDAETNVLSVSPNEETKEALKIVLDFFTNNNDDASVFLDAEHCSTMKTSLDYLSSLSANDGLSEAMRALISEASTVFAHCSSSYIEANMKVESTAPELLRADKLKAELEHNKNQFNDTVASEKELQQKLACLEEMKEELEKQIRTANANIMASRKEQNMTRKRKRDIYVEGKALKAQMDVLNQKVPHLQHEHDLAKVNQEKIKAEWSEFGEKFRKTVVE 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30256g00004 1437 PRINTS Disease resistance protein signature 309 323 - -
Stsc30256g00004 1437 PRINTS Disease resistance protein signature 228 243 - -
Stsc30256g00004 1437 PRINTS Disease resistance protein signature 402 416 - -
Stsc30256g00004 1437 PRINTS Disease resistance protein signature 711 727 - -
Stsc30256g00004 1437 SMART till_3 23 166 IPR000157 GO:0007165
Stsc30256g00004 1437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 461 IPR027417 -
Stsc30256g00004 1437 Gene3D Ribonuclease Inhibitor 795 920 IPR032675 -
Stsc30256g00004 1437 Gene3D Ribonuclease Inhibitor 555 776 IPR032675 -
Stsc30256g00004 1437 Gene3D - 19 190 IPR035897 -
Stsc30256g00004 1437 Coils Coil 1323 1374 - -
Stsc30256g00004 1437 Pfam TIR domain 23 192 IPR000157 GO:0007165
Stsc30256g00004 1437 Gene3D - 367 451 IPR042197 -
Stsc30256g00004 1437 ProSiteProfiles TIR domain profile. 22 193 IPR000157 GO:0007165
Stsc30256g00004 1437 Pfam NB-ARC domain 209 435 IPR002182 GO:0043531
Stsc30256g00004 1437 SUPERFAMILY L domain-like 568 890 - -
Stsc30256g00004 1437 SUPERFAMILY "Winged helix" DNA-binding domain 437 545 IPR036390 -
Stsc30256g00004 1437 Gene3D - 191 361 IPR027417 -
Stsc30256g00004 1437 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 747 IPR044974 GO:0006952
Stsc30256g00004 1437 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 195 - -
Stsc30256g00004 1437 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 169 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30256g00004 Stsc-Chr30256 6713 13241 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30256g00004 24 763 WRKY Transcription Factor Family AT4G12020 31.599 3.52e-81 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30256g00004 - - ahf:112747389 2194.08