Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30255g00002 ATGAATTTTTCAGTTCTAAGATCAGCAACATATTCCACAGTGATTCTTCCAAAACCAGCTTCTCAATCATCTGATTTCTTTCTTCCCTCTAATAACTACCCGTCTGGCCATGCCAGGGCTTCTCTTTCCAGATTTAACGAGATGCCGCAGAAATCGATGGCGAAGAAGAGGGCTTACGAGAAGATAAAGGAGGAGCTGAAAGTTGATGCAAAGCCAAAGATGAACTTGGCTTCCTTTGTGACCACATCAATGGAGGAAGAATGCAACACACTCATGATTGAATCCATGAACAAGAACTATGTTAACATGGATGAGTACCCTGCCACCACTCACCTTCATAATAGATGTGTGAACATGATAGCACGTTTGTTCAACGCTGAAATTGGAGAAAATGAGAATGCAATTGGAACAGGAACTGTTGGATCTTCAGAGGCCATAATGCTGGCAGGGCTTGCATTCAAGAAAAATTGGCAGAACAAGAGAAAGGCCCAAGGAAAGCCCTATCATAGGCCCAACATAGTCACCGGTGCCAATGTCCAGGTATGTTGGGAGAAATTTGCAATGTATTTCGATGTAGAGTTGAGAAAAGTGGAAGTGAGAGAAGGATACTATGTGATGGACCCAAATAAAGCTGTTGAAATGGTTGATGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCTACTTATAATGGAGAATTTGAAGATGTCAAGTTGCTTAACCACCTCTTATTAAAACAAAACAACAAAAATGGATGGGATACACCCATTCATGTTGATGCAGCAAGTGGTGGATTTGTTGCTCCATTTCTTTATCCAGAGCTAGAATGGGATTTCAGGCTTCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAGTATGGTCTTGTTTATGCTGGCATTGGCTGGGTTATATGGAGAACTAAACAAGACTTGCCTCAAGAACTTATCTTCCATATTAATTACCTTGGAGCAGAACAACCCACCTTTACCCTTAATTTTTCTAAAGGGTCTAGTCAGATTGTTGCACAATATTATCAGTTAATTCGCCTTGGTAGAGAGGGATACCAAAGAGTAATGGAAAAATGCAAAGAAAATGCAATGGTGTTGAAACAAGGATTGGAGAAGACGGGATGTTTTAACATACTCTCAAAGGACAACGGTGTTCCTATGGTAGCCTTTTCTCTTAAGGACCGAAGCCGTCATGGCGGCGACGAGTTCAAGATATCTGAGATGTTGCGTCACCGCAATGGTTGGGTCGTGCCAGCATATCCAATGCCATCCGGTGCGGAGCACATCACGGTGCTCCGAGTGGTGGCCAGGGCTGAGTTTTCGCGTGAAATGGCTGAAAAACTCGTGCTTGACATAAAAAATGTGTTACATGAACTTGGGAAGATTGGTCCCAATTACACATCCAAAGTGACCAAAATTAAGGAAGAAAATGCGCAAAGGAAAATCATCGTTCCAAAATCTAACAAGGATCACAAAGTCTTAGCAGGATAG 1503 0.4218 MNFSVLRSATYSTVILPKPASQSSDFFLPSNNYPSGHARASLSRFNEMPQKSMAKKRAYEKIKEELKVDAKPKMNLASFVTTSMEEECNTLMIESMNKNYVNMDEYPATTHLHNRCVNMIARLFNAEIGENENAIGTGTVGSSEAIMLAGLAFKKNWQNKRKAQGKPYHRPNIVTGANVQVCWEKFAMYFDVELRKVEVREGYYVMDPNKAVEMVDENTICVAAILGSTYNGEFEDVKLLNHLLLKQNNKNGWDTPIHVDAASGGFVAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKQDLPQELIFHINYLGAEQPTFTLNFSKGSSQIVAQYYQLIRLGREGYQRVMEKCKENAMVLKQGLEKTGCFNILSKDNGVPMVAFSLKDRSRHGGDEFKISEMLRHRNGWVVPAYPMPSGAEHITVLRVVARAEFSREMAEKLVLDIKNVLHELGKIGPNYTSKVTKIKEENAQRKIIVPKSNKDHKVLAG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30255g00002 500 FunFam Glutamate decarboxylase 377 467 - -
Stsc30255g00002 500 Pfam Pyridoxal-dependent decarboxylase conserved domain 49 397 IPR002129 GO:0016830|GO:0019752|GO:0030170
Stsc30255g00002 500 Gene3D - 377 466 - -
Stsc30255g00002 500 Gene3D - 17 81 - -
Stsc30255g00002 500 PANTHER GLUTAMATE DECARBOXYLASE 30 483 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc30255g00002 500 FunFam Glutamate decarboxylase 82 376 - -
Stsc30255g00002 500 SUPERFAMILY PLP-dependent transferases 41 463 IPR015424 -
Stsc30255g00002 500 NCBIfam glutamate decarboxylase 35 463 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc30255g00002 500 Gene3D - 82 376 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30255g00002 Stsc-Chr30255 6213 11592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30255g00002 14 486 Calmodulin-binding Proteins AT2G02000 69.167 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30255g00002 K01580 - gmx:100812201 739.569