Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30254g00027 ATGCTCTCTGTTTCTGAATCTCTCCAAAGGATGGCAGCTTTGATGTCAGCTAGGTTTCTTCTTGTTGCTGGAGAGTTCTTTCCCATTAGAAGGGCATTGGCAACTCATAGAAATGCTTCTTCTTTGTTGCACACGAGTGCTCATTGCATGAGCCAAGTGGAACCACCAAATCATGGTTCCTTAACCCTCTCGAGTATTGGTTTCCAAAGCGAACTTGATAAACCAATAAACAAGGATGACAAGTCTTCTGGTAAGGTAAAGTCATTGCTGGGTTCATCCCGTGGGTCCCTCAAGGGCAAAGGGATAGGGAAACCTATTGGTTCCAGTGAAAAGAATAAAGCAGTTGGGGTTGCTCAGAGGAAGAAACAGCAAATTGAGGCTGCCCCGTTTGCAGTGAAATTGTTCTCAGAACTTGGGCTGCCTCCTGCTCTGATTGAAAGACTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTGTGGCTGTTCCTACCATTCTGCAGAACCATGATGTTGTAATTCAGTCTTATACAGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCGGCTATTGGTCCCTTGAGGAACAAAGTTTCCAAGAATGACGTTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGTGAGGGAGTTTGAGAAGATTCTAGGAGTGGAGAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCCAACCGAACTAGGCAGGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCAGAGCTTAGCACAGCGGGGAAGCTTCGGACACATGGCTGTCGCTATTTGGTATTGGATGAAGTCGATGAGCTTTTGTCATTCAATTTTCGGGAAGATATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCTGACCCGGATCCAAATGTTAAAAGGACTGAGCGTCAGTTAATTATGGTGTCTGCAACCGTGCCGTTTTCTGTTGTAAGAGCAGCTAGGAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCCACTTGATACTGTCTTGCCTCCAAGGCCTATCAATTTGTCAAGACCTTCAATTGGTTCCACTCCAGACCCAAATATGGCATCTCAGGCATCAACAGAAAGTTTGCCTCCGGCATTGAAACACTATTACTGTGTAGCAAGGTTACAACACAAAGTAGATACCATGAGAAAGTGTATTCATGCTTTGGATGCAAAAATTGTAATAGCTTTCATGAACAACTCTAAGCAGCTAAAGGATGTTGTCTTTAAGCTGGAGGCCCGTGGTATGAAAGCGGTGGAGTTACATGGAGATCTTGGGAAGCTTGCTAGGTCAACAACTCTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCTAGGGGTTTGGATGTGGCAGAATGTGATCTGGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGGACGGTACAGTGCTAACCATATGTGAAGAGTCCGAAGTTTTTGTTGTGAGGAAAATGGAGAAGCAGCTTGGAGTAACTGTAGCATTCTGTGATTTTGTTGAGGGAAAGATGCTTGTCAAGGAAGAAGATAAAGCGCTCAGCACTTCGAGAAAATGA 1746 0.4565 MLSVSESLQRMAALMSARFLLVAGEFFPIRRALATHRNASSLLHTSAHCMSQVEPPNHGSLTLSSIGFQSELDKPINKDDKSSGKVKSLLGSSRGSLKGKGIGKPIGSSEKNKAVGVAQRKKQQIEAAPFAVKLFSELGLPPALIERLEKEGFSVPTEVQSVAVPTILQNHDVVIQSYTGSGKTLAYLLPILSAIGPLRNKVSKNDVGGDSGGKMGIEAVVVAPSRELGMQIVREFEKILGVENKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSTAGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPDPNVKRTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIPLDTVLPPRPINLSRPSIGSTPDPNMASQASTESLPPALKHYYCVARLQHKVDTMRKCIHALDAKIVIAFMNNSKQLKDVVFKLEARGMKAVELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFVVRKMEKQLGVTVAFCDFVEGKMLVKEEDKALSTSRK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30254g00027 581 Pfam Helicase conserved C-terminal domain 430 529 IPR001650 -
Stsc30254g00027 581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 424 568 IPR001650 -
Stsc30254g00027 581 Gene3D - 107 366 IPR027417 -
Stsc30254g00027 581 MobiDBLite consensus disorder prediction 74 105 - -
Stsc30254g00027 581 SMART helicmild6 448 529 IPR001650 -
Stsc30254g00027 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 551 IPR027417 -
Stsc30254g00027 581 SMART ultradead3 152 382 IPR014001 -
Stsc30254g00027 581 Gene3D - 406 562 IPR027417 -
Stsc30254g00027 581 CDD SF2_C_DEAD 409 538 - -
Stsc30254g00027 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 364 IPR014001 -
Stsc30254g00027 581 Pfam DEAD/DEAH box helicase 157 350 IPR011545 GO:0003676|GO:0005524
Stsc30254g00027 581 CDD DEADc 144 365 - -
Stsc30254g00027 581 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Stsc30254g00027 581 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 36 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30254g00027 Stsc-Chr30254 147295 149888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30254g00027 135 557 Eukaryotic Initiation Factors Gene Family AT3G19760 24.057 1.64e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30254g00027 - - aip:107613119 981.089