Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30254g00019 ATGGAGCAAGAAGAGTACACTAAAGAGGAAATCAATTGGAGCTATGTTGAATTTGTGGATAATCAGGATGTTCTTGATCTTATTGAGAAGAAACCTGGGGGAATAATTGCTCTTCTTGATGAAGCCTGCATGTTCCCCAAGTCAACTCATGAGACTTTTGCACAAAAGATGTACCAGACATATAAAGCACACAAGCGCTTTAGCAAACCGAAACTTTCTCGGACAAACTTCACAATTAACCATTATGCTGGAGATGTGACATACCAAGCAGATTATTTCCTGGATAAAAATAAAGATTATGTAGTTGCGGAGCATCAAGCTCTTTTATGTGCATCCAAGTGCTCATTTGTTGCAAATCTTTTCCCTCCTTTACCTGAGGAGACATCAAAGCAGTCAAAATTCTCCTCCATTGGCTCACAGTTTAAGCAACAACTACAATCTCTAATGGAGACACTGAACACAACAGAACCACATTACATAAGGTGTGTGAAGCCAAATACAGTCTTGCACCCAGGAATCTTTGAGAATTTCAATGTCTTGAATCAGTTAAGATGCGGAGGAGTACTTGAGGCGATAAGGATTAGTTGTGCCGGATATCCGACAAAGAGAACATTTGAAGAGTTCCTTGACCGTTTCGGAATGCTAGCTCCAGCAGTCCTTGATGGGTCAGATGAGAAAAAGGCTGCCATTGCCATATGTGATAAGATGGGATTACAAGGCTATCAAATGGGGAAAACAAAGGTGTTCCTTCGAGCTGGCCAGATGGCCGAATTAGATGCACGAAGAGCCGAAGTCTTAGCCAAAGCAGCCAGACTTATACAGAGACAAATCCTGACACATTTAGCAAGGAAAGAGTTCATCACCTTGAGAAATGCTACAATTCATGTTCAGAAAATTTGGAGAGCAAAACTTGCACGTAAACTGTATGAACATATGAGGAGGGAAGCAGCTTCAATCAGGATACAGAAGCATGTGCGTGCACACAGAGAAAGAATGAATTATACATCATTACAAGCATCTTCTATAGTAATTCAATCTGCCATGAGAGCATTAGCTGCACGAAATGAATTCAGGTACCGAAGACAAACGAAGGCTTCAATCAAACTTCAGACACAATGGAGAAGAGTTCAAGCTCTTTCTGATTACAAACAACAAAAGAGAGCAACTATTATACTTCAATGTCTCTGGAGAGCTAGAGTAGCTAGAAGAGAGCTCAGAAAGCTTCGGATAGCTGCAAGGGATACTGGAGCACTTAAGGAAGCAAAGGACAAGTTGGAGAAGCGTGTTGAAGAGCTTACATGGAGATTAGACATCGAAAAACACATGCGGATTGACCTTGAAGAAGCTAAAGGACAAGAGATTGCAAAACTACAAAACACTTTACAAGAAATACAAGGTCAGCTTGAAGAAGCTCGCGCCGCAATTATACATGAGCGAGAAGCAGCAAAACTAGCAATTGAACAAGCACCACCAGTAATTAAAGAGGTTCCTGTTGTGGACAACACCAAGCTAGAGTTACTATCAAATAAAAATGAGGAACTGGAGACTGAAGTGGAAGAGTTGAAGAAGAAGATTAAAGAATTTGAAGAAAAGTGCTCAGCCATTGAAAACGAGAATCAAGCTAGGATTAAAGAGGCAGAAGAAGCACAACTAAAAGCAACACAACTTCAAGAGACTATTGAAAGATTGGAAGTGAGCTTGTCCAACCTCGAAACCGAAAATCAAGTACTATGCCAGCAGGCATTGGTAGAATCGAAAAATGAAGATCTTTCGGAAGAGATCAAAATCCTAAAGGATCAGATAGCAAACCTAGAATCGGAGAACGAACTCCTGCGGCGCCAGGCAGCAGCAGCTGCCATGGAGCAGAAAGTTCACCCTGATATAATAGCAACAAACCAGGAAATTGCTGCTGATCAACAAGATCAACATATTCAGCAAAGAATTGTAGCAGATAATGTGACTCCACAAATCAAGGAACCAAGAGCAGCTGTCTCCTTCCTTACAAAACAAAGATCAGTCACAGACCGGCAGCAGGAAAGTTATGATGCACTGCTCAAGTGCCTTACCGAAGATAAGCGTTTCGAGAACAAGAGACCAGCAGTTGCTTGTATTGTTTATAAAGCACTTCTTCATTGGAGATCCTTTGAAGCTGAGAAGACACATATATTTGATAAAATTAGTCACACCATTCGATCATCTATCGAGAATCAAGAAGGAATCAATGATCTAGCATATTGGCTTTCAACAACTTCAACACTTCTTTTTTATCTGCAATGCACACTAAAAGTCAGCAACACAACTAAGGCAGTGTCACGCAATCGGAACTCCCCAGCAACTCTATTTGGGAAAATGGCACAAGGTTTACGTTCATCTTCATTGGGCATGGGGATTTCAAGCGGCTATAGTGGAATGGTGGACAAGCTCAATGACCAATCTAAAGTGGAAGCCAAGTACCCAGCAATTCTGTTTAAGCAACATTTGACTGCATATGTTGAGAAGATATATGGAATGATCCGTGACAGTTTAAAGAAGGAGGTCACCCCTTTCTTGAATTTGTGTATTCAGGCACCAAGAGCCATAAGAACCAGATCAATAAGAGGATCATCAAGAAACATCCATTCAAATATACTTGCAAAACAACAGGCATTGCACATGCACTGGAAAAGCATTGTCAGCAAGTTAGATGAAATCTTGGGTGTCCCTTCCATGATAACTGGGAAGATATTTAGTCAGGTTTTCTCCTTCATGAATGTCCAACTCTTTAACAGTTTGTTGCTTCGTCGCGAGTGCTGCTCATTTAGCAACGGAGAATATCTGAAGGCAGGTTTGCATGAGTTGGAACTGTGGTGTCTCAAAGCAACAGATCAGTTTGCAGGGTCATCTTGGCATGAACTCAAACAAATACGCCAAGCCATTGGATTCCTGGTCTTGCATCAAAAGGCTCACAAATCTTTGGAAGAGATCACCAATGAACTCTGCCCGGTGTTAAGTATTCCACAAATATATCGTATTGGAACTATGTTCTGGGATGACAAATATGGATCTCAAGGATTATCACCAGAAGTCATAAGCAGAATGAGAGTACTTATGACAGAGGACTCGACAAACATGCCCAATAACTCATTCCTTCTTGAAGTGGACTCCAGCATACCATTCTTGATGGAGGAGATGTTCCGATCTATGAGTGACATCCGACTATCAGATATGGAAGTGGATCCACCACCAATTCTCAGGCAAAGGTCTGATTTCCAATTCTTGTTGCAACACATTGAAAGTGATTCTCAGTAA 3288 0.4121 MEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKAHKRFSKPKLSRTNFTINHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCSFVANLFPPLPEETSKQSKFSSIGSQFKQQLQSLMETLNTTEPHYIRCVKPNTVLHPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLAPAVLDGSDEKKAAIAICDKMGLQGYQMGKTKVFLRAGQMAELDARRAEVLAKAARLIQRQILTHLARKEFITLRNATIHVQKIWRAKLARKLYEHMRREAASIRIQKHVRAHRERMNYTSLQASSIVIQSAMRALAARNEFRYRRQTKASIKLQTQWRRVQALSDYKQQKRATIILQCLWRARVARRELRKLRIAARDTGALKEAKDKLEKRVEELTWRLDIEKHMRIDLEEAKGQEIAKLQNTLQEIQGQLEEARAAIIHEREAAKLAIEQAPPVIKEVPVVDNTKLELLSNKNEELETEVEELKKKIKEFEEKCSAIENENQARIKEAEEAQLKATQLQETIERLEVSLSNLETENQVLCQQALVESKNEDLSEEIKILKDQIANLESENELLRRQAAAAAMEQKVHPDIIATNQEIAADQQDQHIQQRIVADNVTPQIKEPRAAVSFLTKQRSVTDRQQESYDALLKCLTEDKRFENKRPAVACIVYKALLHWRSFEAEKTHIFDKISHTIRSSIENQEGINDLAYWLSTTSTLLFYLQCTLKVSNTTKAVSRNRNSPATLFGKMAQGLRSSSLGMGISSGYSGMVDKLNDQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEVTPFLNLCIQAPRAIRTRSIRGSSRNIHSNILAKQQALHMHWKSIVSKLDEILGVPSMITGKIFSQVFSFMNVQLFNSLLLRRECCSFSNGEYLKAGLHELELWCLKATDQFAGSSWHELKQIRQAIGFLVLHQKAHKSLEEITNELCPVLSIPQIYRIGTMFWDDKYGSQGLSPEVISRMRVLMTEDSTNMPNNSFLLEVDSSIPFLMEEMFRSMSDIRLSDMEVDPPPILRQRSDFQFLLQHIESDSQ 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30254g00019 1095 SMART MYSc_2a 1 264 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00019 1095 Gene3D - 1 124 - -
Stsc30254g00019 1095 ProSiteProfiles IQ motif profile. 314 341 IPR000048 GO:0005515
Stsc30254g00019 1095 Coils Coil 504 621 - -
Stsc30254g00019 1095 Coils Coil 255 275 - -
Stsc30254g00019 1095 SMART DIL_2 907 1014 IPR002710 -
Stsc30254g00019 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 317 IPR027417 -
Stsc30254g00019 1095 Gene3D - 199 261 - -
Stsc30254g00019 1095 SMART iq_5 336 358 IPR000048 GO:0005515
Stsc30254g00019 1095 SMART iq_5 384 406 IPR000048 GO:0005515
Stsc30254g00019 1095 SMART iq_5 288 310 IPR000048 GO:0005515
Stsc30254g00019 1095 SMART iq_5 313 335 IPR000048 GO:0005515
Stsc30254g00019 1095 SMART iq_5 361 383 IPR000048 GO:0005515
Stsc30254g00019 1095 SMART iq_5 265 287 IPR000048 GO:0005515
Stsc30254g00019 1095 Gene3D Kinesin motor domain 126 198 IPR036961 -
Stsc30254g00019 1095 Coils Coil 415 442 - -
Stsc30254g00019 1095 ProSiteProfiles Myosin motor domain profile. 1 263 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00019 1095 Pfam DIL domain 908 1011 IPR002710 -
Stsc30254g00019 1095 ProSiteProfiles IQ motif profile. 385 414 IPR000048 GO:0005515
Stsc30254g00019 1095 ProSiteProfiles IQ motif profile. 337 366 IPR000048 GO:0005515
Stsc30254g00019 1095 ProSiteProfiles IQ motif profile. 289 318 IPR000048 GO:0005515
Stsc30254g00019 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 413 IPR027417 -
Stsc30254g00019 1095 PANTHER MYOSIN 1 1020 - -
Stsc30254g00019 1095 Pfam IQ calmodulin-binding motif 316 334 IPR000048 GO:0005515
Stsc30254g00019 1095 Pfam IQ calmodulin-binding motif 387 406 IPR000048 GO:0005515
Stsc30254g00019 1095 Pfam IQ calmodulin-binding motif 290 309 IPR000048 GO:0005515
Stsc30254g00019 1095 Pfam IQ calmodulin-binding motif 268 286 IPR000048 GO:0005515
Stsc30254g00019 1095 ProSiteProfiles Dilute domain profile. 724 1032 IPR002710 -
Stsc30254g00019 1095 Gene3D - 264 316 - -
Stsc30254g00019 1095 Gene3D - 317 363 - -
Stsc30254g00019 1095 Gene3D - 364 412 - -
Stsc30254g00019 1095 FunFam unconventional myosin-Va 364 412 - -
Stsc30254g00019 1095 FunFam unconventional myosin-Va 268 316 - -
Stsc30254g00019 1095 Pfam Myosin head (motor domain) 2 251 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00019 1095 CDD MyosinXI_CBD 675 1055 IPR037975 GO:0007015
Stsc30254g00019 1095 Coils Coil 447 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30254g00019 Stsc-Chr30254 101912 110786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30254g00019 1 1090 Myosins gene family AT2G31900 68.062 0.0 1530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30254g00019 K10357 - gmx:100817933 1871.29