Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30254g00018 ATGGGAACGCCTGTGAACATCATCGTGGGATCACATGTTTGGGTTGAGGATCCTGAGATTGCATGGATTGATGGTGAGGTTACAGAAATCAATGGCAGCAATGCCACCATCATTACTTCAAATGGAAGAACTGTGGTGGCAGAAATTTCAAGTATTTATCCAAAAGATACAGAAGCACCACCAGCAGGAGTTGATGACATGACAAAGCTGGCATACCTCCATGAGCCTGGAGTCTTGCACAACCTCGCAATTCGTTTCTCTCTCAATGAGATATATACATATACAGGGAATATCTTGATTGCAGTGAATCCTTTTCGACGGCTGCCACACTTGTATGATATCCATATGATGCAGCAATACAAAGGAGCAGCATTTGGAGAGCTGAGTCCTCACCTTTTCGCCGTCGCGGACACCTGCTACAGGGCAATGATAAATGAAAATGGAAGCCAGTCCATTCTGGTGAGTGGAGAGAGTGGTGCTGGTAAAACAGAAACCACCAAAATGTTAATGAGATATCTAGCATTCATGGGTGGAAGATCAGGTACAGAAGGAAGAACAGTAGAACAACAGGTTTTGGAGTCCAATCCAGTGTTAGAAGCATTTGGAAATGCCAAAACTGTCAAAAATAACAATTCAAGTCGTTTTGGTAAGTTCGTAGAAATCCAATTCGACAAGAATGGGAAGATTTCCGGAGCTGCAATTCGAACATATCTCCTAGAAAGGTCTCGAGTTTGCCAAGTCTCCGACCCGGAGAGAAACTATCACTGCTTTTACATGCTTTGTTCAGCACCACCAGAGGATGTCAAGAAATACAAGTTGGGGGATCCAAAGCAATTCCACTATCTTAATCAATCAAACTGTTATCAAGTTTCAAATGTAGATGATGCAAAAGAATACTTGGAGACCAGAAATGCAATGGATATTGTAGGAATCAACCAAGAAGAACAGGATGCTATCTTTCGTGTGGTGGCCGCGATCCTCCATCTTGGTAACATTGAATTTGTCAAAGGGAATGAAGTTGATTCTTCCAAACTGAAAAATGAAAAATCAGTCTTCCACCTTCGGACAGCCGCAGAGTTGTGTGATGAGAAAGCATTAGAGGACTCACTTTGCAAGCGTGTCATTGTTACTCCTGATGGAAATATTACAAAACCATTGGACCCGGATGCAGCTTCTTTGAGCCGAGATGCTTTGGCCAAAACCGTTTACTCCAGACTGTTTGATTGGATCGTTGACAAGATTAACAGTTCAATTGGTCAAGACTCCAACGCAGTAAGCATAATCGGAGTCCTTGATATTTATGGGTTTGAGAGCTTCAAAATCAACAGGTAA 1332 0.4242 MGTPVNIIVGSHVWVEDPEIAWIDGEVTEINGSNATIITSNGRTVVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLAIRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMQQYKGAAFGELSPHLFAVADTCYRAMINENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSGTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCSAPPEDVKKYKLGDPKQFHYLNQSNCYQVSNVDDAKEYLETRNAMDIVGINQEEQDAIFRVVAAILHLGNIEFVKGNEVDSSKLKNEKSVFHLRTAAELCDEKALEDSLCKRVIVTPDGNITKPLDPDAASLSRDALAKTVYSRLFDWIVDKINSSIGQDSNAVSIIGVLDIYGFESFKINR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30254g00018 443 Gene3D Myosin VI head, motor domain, U50 subdomain 312 442 - -
Stsc30254g00018 443 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00018 443 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00018 443 PRINTS Myosin heavy chain signature 427 443 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00018 443 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00018 443 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00018 443 PANTHER MYOSIN 54 442 - -
Stsc30254g00018 443 FunFam Myosin 2 312 427 - -
Stsc30254g00018 443 Pfam Myosin N-terminal SH3-like domain 9 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00018 443 Pfam Myosin head (motor domain) 64 442 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00018 443 ProSiteProfiles Myosin motor domain profile. 62 443 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00018 443 SMART MYSc_2a 56 443 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30254g00018 443 Gene3D Kinesin motor domain 12 296 IPR036961 -
Stsc30254g00018 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 442 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30254g00018 Stsc-Chr30254 98202 101666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30254g00018 1 442 Myosins gene family AT1G08730 76.802 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30254g00018 K10357 - gmx:100817933 841.647