Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30253g00018 ATGTCTTTCCCCAATCACGCATTTTGGATGGCAAAGGATCCTGGAAGTTTGAATGATGGTGACATAACATGTGACGATTCTTCTAGAATTGAGTCCAAGAGGGCTCATCAATGGTTCATGGATGGTCCTGCAGCGGATGTATTTCCCAATAAGAAACAGGCCGTAGTGCCCCCAAACAATTTACTGTCAGGAATGCCTAACTCCAATCTTTCTTCATGGGGAAATTCCTCAAGTTTCCAAGCTTTAACCTGTGATTTCACTGAACAATTGTTTGACCCCGATACAGCTACTACCAATCATGGGGATGCAAATATTTCATCTGTTAGCATGGACAATAAGTTAGGTGGAGAGAGAAAGGATAGCATGAATCCCTATGGCAGTGCTCCATCATTTGGTTTATCAATGTCCTGTACATTGGATGATCCTCGGTTAGTTTTCAATTATGATGGAATTAGAAAAGTTAAAGTTAATGAAGTGAAGGAATCTCATAATGTCATGTCTGTCCCTGAAAATAATCCCTATGATAAGGGTGTCAGCAGCACTGTGTTAAATCCTCAGGCATACAAGGGTGATGATAATTCCATGTCAATGAATCTTGCCTACACCAAAGGGGATGCTAATATAATATCAATGGATGACCCGTTCGGCAGGACAGATAACAGTTTAATGTCAGTGGTTCAATCTCATAACAAGGGAGAGGATGGCTTATCTATTCATCAAACGTACAAAGACATTTGTAATACAATATCAATTGATCAAGAATTTAGCAAGATGGATAGCAGCATGGCATCTATTGCTCAAGCTTATAAGGCTGATGACAATTCTATGTTAAGAGATTACTTATTTGACAAGGTTGAAAATGGCACCGTATCAGCGGGTCAACCATATGGCCTGGGAGGAAACAACGTGCCATTTGTTTCACCTTCTTATAACAGTGGGGAGAGCACTATTATATCCTTTGGCGGCTGCGATGATGATGATCCAACTCACTCTGGCCTATTCATTTCCAGCTATGACATGTTGATGGGTCAAGCACTTAAACAGAAGTTGGAAGCTGTGAATGAGAAAGAGTTTGCCAGATCTAATTCTAATTTACTTCTGAATACAGCCCAGACATCTGCATCTGAAACTGAAAGTGTTTCCAAGACAAAAGAAGAGATAAAAATGTCTAAGAAAGCTACTTCAAACAATTTCCCTTCAAATGTCAGAAGTTTGCTATCCACTGGCATGCTTGATGGTGTCTCTGTAAAGTATAAGGCTTGGTCGCGGGAGGAGCTTCGAGGAGTTATAAAAGGTGCTGGGTATTTATGCAGTTGCCAGTCTTGTAATTTTTCCAAGGTTATTAATGCATATGAGTTTGAGCGACATGCTGGTTGCAAGACAAAACACCCCAATAATCATATTTACTTTGAGAGCGGGAAAACTATATATGGGGTTGTACAAGAGCTCCGGAGCACTCCGCAGAATATGTTATTTGATGTTCTCCAGACAGTAACTGGTTCAGCAATCAATCAGAAGTCCTTCCGCATTTGGAAAGAATCCTTTTTGGCTGCTGCTCGGGAACTCCAGCGCATTTGTGGAAAAGATGAAGTAAAGCAGCTATTATAA 1608 0.4061 MSFPNHAFWMAKDPGSLNDGDITCDDSSRIESKRAHQWFMDGPAADVFPNKKQAVVPPNNLLSGMPNSNLSSWGNSSSFQALTCDFTEQLFDPDTATTNHGDANISSVSMDNKLGGERKDSMNPYGSAPSFGLSMSCTLDDPRLVFNYDGIRKVKVNEVKESHNVMSVPENNPYDKGVSSTVLNPQAYKGDDNSMSMNLAYTKGDANIISMDDPFGRTDNSLMSVVQSHNKGEDGLSIHQTYKDICNTISIDQEFSKMDSSMASIAQAYKADDNSMLRDYLFDKVENGTVSAGQPYGLGGNNVPFVSPSYNSGESTIISFGGCDDDDPTHSGLFISSYDMLMGQALKQKLEAVNEKEFARSNSNLLLNTAQTSASETESVSKTKEEIKMSKKATSNNFPSNVRSLLSTGMLDGVSVKYKAWSREELRGVIKGAGYLCSCQSCNFSKVINAYEFERHAGCKTKHPNNHIYFESGKTIYGVVQELRSTPQNMLFDVLQTVTGSAINQKSFRIWKESFLAAARELQRICGKDEVKQLL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30253g00018 535 Pfam Tify domain binding domain 428 483 IPR032308 -
Stsc30253g00018 535 MobiDBLite consensus disorder prediction 97 111 - -
Stsc30253g00018 535 MobiDBLite consensus disorder prediction 97 119 - -
Stsc30253g00018 535 PANTHER AUTOIMMUNE REGULATOR 8 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30253g00018 Stsc-Chr30253 145378 148978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30253g00018 387 515 PHD Transcription Factor Family AT3G53680 56.923 9.23e-43 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30253g00018 - - gmx:100794765 676.396