Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30253g00012 ATGGGACACGAACCCCGAAAGCTATTAGATGAATACGAGGTGTCAGAGATTCTAGGAAGAGGGGGATTCTCTGTAGTTAGGAAGGGCATTAAAAAGTCAAGCAATGATGAGAAAACTCATGTTGCCATAAAGACCTTAAGAAGAGTAAGTGCCTCTACTTCAACCTCTAGAGACAGGAGCAATGTGGTTTTCTCCACTTGGAGACCAATTTCAGTGTCAGATGCTCTTCTCACCAATGAGATCCTTGTGATGAGGAAAATAGTCGAAAATGTTTCACCACATCCGAATGTGGTTGACCTCTATGATGTCTATGAGGACTCGAATGGTGTTCATCTTGTTTTGGAGCTGTGTTCTGGTGGTGAACTTTTTGATCGCATTGTAGCACAGGATAGGTACTCAGAGACTGAGGCTGCAACCGTTGTTCGCCAGATTGCGGCAGGCTTAGAGGCTATTCACAAAGCCAACATTGTCCATAGAGACTTGAAACCTGAGAATTGCTTGTTCTTGGACAAGAGGAAGGACTCTCCTCTAAAGATCATGGACTTCGGTTTGAGCTCTGTTGAAGAGTTTACTGATCCAGTTGTTGGTTTGTTTGGTTCCATTGATTATGTTTCACCGGAGGCACTTTCTCAAGGAAAGATAACAGCTAAGAGTGACATGTGGTCTCTAGGAGTAATTTTGTACATCTTGCTATCTGGATATCCACCTTTTATTGCTCAGTCTAATCGCCAAAAACAACAAATGATATTGAATGGGAATTTTAGCTTCTACGAGAAGACATGGAAGGACATTTCCCAATCAGTGAAGCAATTGATTTCGAGTCTTCTGACAGTTGATCCTAGTAGGAGGCCTAGTGCACAAGAGCTCCTGAGTCATCCATGGGTCAGAGGTGATGTAGCCAAAGATGATCAGATGGACCCAGAGATTGTCTCAAGGTTGCAAAGCTTCAATGCTCGCCGCAAACTCCGGGCAGCTGCAATTGCAAGCGTATGGAGCACCACAATGTTCTTGAGAACCAAGAAACTGAAATCCTTGATAGGATCCTATGACCTCACAGAAGAGGAAATTGAAAATCTCAGGATACACTTCAAGAATATATGTGGAAATGGGGACAATGCCACGCTCTGTGAGTTTGAGGAGGTACTGAAAGCAATGAATATGCCATCACTAATTCCTCTAGCACCGCGCATATTTGACTTGTTTGACAACAACCGTGATGGAACGGTTGACATGCGAGAGATTTTATGTGGGTTTTCCAGCCTCAAGAATTCCAAAGGAGATGATGCCCTCCGTTTGTGCTTCCAGATGTATGATGCCGATCGATCCGGGTGTATCACAAAGGAAGAAGTAGCATCCATGCTCAGAGCCCTACCTGATGACTGTCTTCCTGTTGATATCACTGAACCCGGCAAATTGGACGAGATTTTTGACAGAATGGATGCCAACAGTGATGGAAAAGTAACCTTTGAGGAATTCAAAGCTGCTATGCAGAGAGATAGCTCCCTCCAAGATGTAGTGCTTTCTTCTCTTCGCCCGCAATAG 1542 0.441 MGHEPRKLLDEYEVSEILGRGGFSVVRKGIKKSSNDEKTHVAIKTLRRVSASTSTSRDRSNVVFSTWRPISVSDALLTNEILVMRKIVENVSPHPNVVDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAATVVRQIAAGLEAIHKANIVHRDLKPENCLFLDKRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITAKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMILNGNFSFYEKTWKDISQSVKQLISSLLTVDPSRRPSAQELLSHPWVRGDVAKDDQMDPEIVSRLQSFNARRKLRAAAIASVWSTTMFLRTKKLKSLIGSYDLTEEEIENLRIHFKNICGNGDNATLCEFEEVLKAMNMPSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSLKNSKGDDALRLCFQMYDADRSGCITKEEVASMLRALPDDCLPVDITEPGKLDEIFDRMDANSDGKVTFEEFKAAMQRDSSLQDVVLSSLRPQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30253g00012 513 SMART efh_1 393 421 IPR002048 GO:0005509
Stsc30253g00012 513 SMART efh_1 429 457 IPR002048 GO:0005509
Stsc30253g00012 513 SMART efh_1 471 499 IPR002048 GO:0005509
Stsc30253g00012 513 Gene3D Transferase(Phosphotransferase) domain 1 124 338 - -
Stsc30253g00012 513 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Stsc30253g00012 513 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Stsc30253g00012 513 Pfam Protein kinase domain 12 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30253g00012 513 PRINTS Recoverin family signature 421 440 - -
Stsc30253g00012 513 PRINTS Recoverin family signature 487 507 - -
Stsc30253g00012 513 PRINTS Recoverin family signature 351 370 - -
Stsc30253g00012 513 PRINTS Recoverin family signature 397 418 - -
Stsc30253g00012 513 CDD STKc_CAMK 12 294 - -
Stsc30253g00012 513 Pfam EF-hand domain pair 428 497 IPR002048 GO:0005509
Stsc30253g00012 513 PANTHER SERINE/THREONINE-PROTEIN KINASE 8 472 - -
Stsc30253g00012 513 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Stsc30253g00012 513 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 122 312 - -
Stsc30253g00012 513 SMART serkin_6 12 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30253g00012 513 ProSiteProfiles Protein kinase domain profile. 12 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30253g00012 513 Gene3D - 339 506 - -
Stsc30253g00012 513 CDD EFh 396 455 IPR002048 GO:0005509
Stsc30253g00012 513 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Stsc30253g00012 513 Pfam EF hand 398 413 IPR002048 GO:0005509
Stsc30253g00012 513 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Stsc30253g00012 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Stsc30253g00012 513 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 338 507 - -
Stsc30253g00012 513 SUPERFAMILY EF-hand 339 503 IPR011992 -
Stsc30253g00012 513 CDD EFh 430 497 IPR002048 GO:0005509
Stsc30253g00012 513 Gene3D Phosphorylase Kinase; domain 1 6 123 - -
Stsc30253g00012 513 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Stsc30253g00012 513 SUPERFAMILY Protein kinase-like (PK-like) 5 317 IPR011009 -
Stsc30253g00012 513 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30253g00012 Stsc-Chr30253 88806 99244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30253g00012 86 500 EF-hand Containing Proteins AT3G10660 37.589 1.24e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Stsc30253g00012 Pkinase 2.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30253g00012 K13412 - gmx:732616 884.019