Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30252g00029 ATGATTACATTTATGGAGTCAAAGGAGAAAACAAGAGAAGCAGTGGAGAAATGTCTGGATCCTCAGCTATGGCATGCCTGTGCTGGTGGAATGGTACAGATGCCACAGGTGAACACCAAGGTCTATTACTTCCCTCAGGGCCATGCTGAGCATGCATGTGCTCCTGTCAACTTTAGGACCTGCCCCAAACTGGTTCCTCCTATGCTTCCATGCAGGGTTACTGCTGTCAACTACATGGCTGATCCTGAGACTGATGAGGTCTATGCCAAGCTTAGGCTTCTTCCTCTCACTCCCACTGATGCTGATTATGGAAATGATCTTGCTGTTATTGGAGGAGCTGGAATCCATGAGCCTGACCCTCAGGATAAGCCTGCTTCATTTGCAAAGACCTTGACTCAATCCGATGCCAACAATGGTGGAGGCTTTTCGGTTCCTAGGTATTGTGCCGAGACTATTTTCCCCAGGCTGGACTACTCGGCCGACCCTCCCGTACAGAGCATACTTGCAAAAGATGTTCACGGCGAGACATGGAAGTTTAGGCACATTTATCGGGGCACGCCGAGGCGGCATCTCCTAACTACCGGTTGGAGTACTTTTGTCAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTGAGGGCAGACAATGGGGAACTGTGTGTTGGGATTCGGCGAGCCAAGAAGGGTCTTGGCGGCGGGCCTGAGGCTTCTTCAGGTTGGAATCCGGCCGGTGGAAATTGTCCTCTGCCTTATGGTGGATTTCCGGGGTTTCTGAAGGAGGATGATATCAGGCTCTTGAGAAATGGTAACGGCAATGGATTGGACCCGGGCGCGAGAATGATGGGGAAGGGGAAAGTGCGGCCGGAAGCGGTTATTGAAGCTGCTACTCTTGCTGCCAACAAGCAACCTTTTGAGGTGGTTTACTACCCTCGCGCGAGTACGCCGGAGTTCTGTGTGAAGGCCTCACTGGTTGAAGCAGCACTGCAGATTAGGTGGTGCTCTGGAATAAGGTTCAAGATGGCCTTTGAAACGGAGGACTCGTCACGAATTAGTTGGTTTATGGGTACCATATCTTCAGTTCAGGTTGCTGATCCCCTTGGATGGCCTAACTCACCTTGGAGGCTTCTTCAGGTTACATGGGACGAACCAGATTTACTTCAAAATGTGACAAGAGTGAGCCCATGGCTTGTTGAATTGGTGTCAAATATGCCGGCCCTTCATCTTTCACCATTCTCGCCACCGCGGAAGAAATTAAGATTGCCCCAGCACCCGGATGTGGCAACATTTCCCACCAACCTGCTAGGTGCGAGTAACCCTTATGGTTGTTTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGCATATCATTATCAGATCTCCACCTCAATAAACTGCAGTCAGGTCTATATTCGGCTGGTTTCCCGTCTCTTGATCGCCTCTCCAATAACTTACTCTTGCAAAACCAAAAGCCCAGCACCACTGAAAATGTCTCTTGCTTGTTATCTATGGCGAGTTCCGTGCAATCTTCTAAGAAACCAGATGAAGGGAAGACGGCGCAGCTTGTGCTTTTTGGCCAAAAGATTCTTACGGAGCAGCAGCTCTCTCTGAGCAGCTCTGGCGATGCAGTCTCCCCTGTTCGTACCGGAAATAGTTCATCGGATGGAAATGCTGATAAACTGAATAATTTTTCTGATGGTTCTGCTTCTGCTCTGCATCAGCAAGGCATACCAGAACGCTCCTCTTGTGAGAGGTTCCCGTGGTATAAGGATCAGCGTCAAGAAACCGAGGCCGGTCACTGCAAAGTTTTTATGGAATCCGAAGATGTAGGTCGGACATTGGACCTGTCGTTGCTTGGTTCGTATGATGAACTGCACAGAAAGCTAGCAGACATGTTTGGCATCGAAAAATCTGAGATGCTAAGTCACGTGCTGTACCGAGACATAAATGGTGCAGTTAAACACCTTGGAGATGAGGCATTTGGTGATTTCTCAAGAACAGCAAAGAGATTGACTATTCTAATGGATTCCAGCAGTGACAATGTAGGAGTGTAG 2076 0.4913 MITFMESKEKTREAVEKCLDPQLWHACAGGMVQMPQVNTKVYYFPQGHAEHACAPVNFRTCPKLVPPMLPCRVTAVNYMADPETDEVYAKLRLLPLTPTDADYGNDLAVIGGAGIHEPDPQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQSILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGELCVGIRRAKKGLGGGPEASSGWNPAGGNCPLPYGGFPGFLKEDDIRLLRNGNGNGLDPGARMMGKGKVRPEAVIEAATLAANKQPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLGWPNSPWRLLQVTWDEPDLLQNVTRVSPWLVELVSNMPALHLSPFSPPRKKLRLPQHPDVATFPTNLLGASNPYGCLPESTPAGMQGARHAHYGISLSDLHLNKLQSGLYSAGFPSLDRLSNNLLLQNQKPSTTENVSCLLSMASSVQSSKKPDEGKTAQLVLFGQKILTEQQLSLSSSGDAVSPVRTGNSSSDGNADKLNNFSDGSASALHQQGIPERSSCERFPWYKDQRQETEAGHCKVFMESEDVGRTLDLSLLGSYDELHRKLADMFGIEKSEMLSHVLYRDINGAVKHLGDEAFGDFSRTAKRLTILMDSSSDNVGV 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30252g00029 691 Gene3D - 601 689 - -
Stsc30252g00029 691 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Stsc30252g00029 691 SUPERFAMILY DNA-binding pseudobarrel domain 121 228 IPR015300 -
Stsc30252g00029 691 ProSiteProfiles PB1 domain profile. 605 688 IPR000270 GO:0005515
Stsc30252g00029 691 FunFam Auxin response factor 334 407 - -
Stsc30252g00029 691 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Stsc30252g00029 691 FunFam Auxin response factor 125 229 - -
Stsc30252g00029 691 Pfam Auxin response factor 296 379 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc30252g00029 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 683 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc30252g00029 691 Gene3D - 333 407 - -
Stsc30252g00029 691 MobiDBLite consensus disorder prediction 547 584 - -
Stsc30252g00029 691 CDD B3_DNA 126 227 IPR003340 GO:0003677
Stsc30252g00029 691 Gene3D - 125 229 IPR015300 -
Stsc30252g00029 691 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30252g00029 Stsc-Chr30252 150718 153327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30252g00029 14 691 B3 DNA Binding Superfamily AT4G30080 57.468 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc30252g00029 B3 1.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30252g00029 - - gmx:100796522 1136.32