Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30252g00020 ATGGGACCAATCTCTGCATCCTTCGGAAAACGCGACCTCTTCTGCGCCATCGACGCTAGCGGCAATCAAAACATTCTATGCTTCGGAAACAACGTCACTTCACAACCTCCATCACAATCCAATGCATCTTCATCTTCTTCCTCTCTACCTTATTTCACCGACCTTCCTCCCATGTCAGCACTTTCCGGGGGCCAAGGTTTCTTCTGTGGCATTTTAGCAAACACTTCACAGCCTTTTTGCTGGCCCGCCGGAAAACCTGCCGCTGATCCACTTCTCGTGCCCCCCGCCTACCGCAACACCGCCTACTCCCGCATTGCCGCCGGAAACTCACACGTCTGCGCAGTCAGAGGATCCTACTTCTCCGATCGCGCTTCCGGCAACGTCGATTGCTGGGAAGTCGCTCAGACGCCCAACAACTCCTTCATCGCCAAACAGACCCTTGCGTTCTACGACCAATCCGTTAGCAATCTCCAGTTTAACGACGTCGTTTCCGGCGACGATTTCTCTTGCGGCGGCGTTAGGGACGGAGGCCTCCTTTGCTGGGGTCCAAATTCCAAGAATCTCCAAGTTTCCAACGTCTCCGATAGCTTCTCCGTTTTGGCCTCCGGGAAAAACGCGATTTGCGGAGTTTCAAACTCTTCGGGCGAGTTGAAATGCTGGGGCGACCCGAATTCATATTCTGATCCTGAGGCAGCGGGTCGGGTTGAGCTGATTTCTCTGTCTGCAGGTTATGGCTTTATGGCCATTGCTTCTTCGGATTACACAACTTGTGGGATCAGAGAAGATGATCTTTTGCTTGATTGTTGGGTGGTCAACGCATCAAAGCCTAACTTTGACCCTCCCTTAGAGCTTTCAAGCCCTGGCCTTTGTCAGAACAGGCCTTGCGGTGATGGCGAGTTTGCCTTTAATGTGAGTGTTCTTAATGAGCCTGATTTGACCAGTTTGTGTGTGAGGCAGGATTTGAGGATTTGTTCACCTTGTGGCTCTAATTGCTCTCAGGGTTTCTTCTTGTCTAGTCCTTGTGCTTTCAACAATGATAGGGTCTGCACTGCTTGTTCTCTTTGCCAGAATAGCTCTTGCTGGTCTGTTTGTGGGATTCACCCATCTACACCCTTGCACTTGCACCATTTCCTTAGGTGGCTCCTCATCATTGGATCTTCTGCTTTGGGATTCCTCCTCATTTTAGTTTGTGGCTGTGTTTTTCCTCGCTTCCTGGGGAAGAGGACAAAGAAGCAATCCAACAAGTCTTGTATGGGGAAGATGGAGCAGGAGGATGATGGTGATTTGAATGGTGGTGTTGCCATTAACTCAACTCCTTCAATTGCTTCGTGTCCAGGGGTGCCTCAGGTTTTCCGTCTTTCGGAGCTGAAAGATGCTACTAATGGATTCAAAGAGTTCAATGAGCTTGGAAGGGGGAGTTATGGCTTTGTCTACAAGGCTGCTCTGGGAGATGGTAGAGTGGTTGCTGTGAAGAGGGCTAATGCTGCCACAATTATACACACCAACAACCGTGATTTTGAGATGGAGCTTGAAATCTTGTGCAAGATTAGACATTGTAATATTGTTAACCTTGTTGGTTACTGCGCGGAGATGGGGGAAAGGTTGCTTGTTTACGAGTATATGCCTCATGGAACACTTTATGATCACCTCCATGGTGGCCTTTCTCCTCTTAATTGGACCCTTAGATTGAAGATTGCTATGCAGGTTGCAAAGGGCCTTGACTATCTTCACAGGGAGCTTTCACCTCCCGTACCCCACAGGGATCTCAAGACCTCCAACATTCTCTTGGATTCACAGTGGGGGGCTCGCATTTCGGATTTCGGACTAATCACTTCCACTGACAAGGACCTTCCAGGGGACTTGGATACTGATGTTTATAATTTTGGGATTGTGTTGCTTGAGATTCTAAGTGGCAGGAAAGCTTGTGACAGAGATTTCAATCCTCCGGACATAGTGGAGTGGGCAGTGCCTTTGATCAAACAGGGCAAGGCGGCTGCTATCATCGATCGCTACACGGCTCTGCCCAGAAACGTTGAGCCTTTGCTTAGGCTTGCCGATATAGCTGAGCTTTCTGTCAGAGAGAATCCAGCCGAGCGTCCTCCATTGCCGGATATAGCATCTTGGTTGGAGCAAATTGTGAAGGATGGATTAATTTTATAG 2160 0.4917 MGPISASFGKRDLFCAIDASGNQNILCFGNNVTSQPPSQSNASSSSSSLPYFTDLPPMSALSGGQGFFCGILANTSQPFCWPAGKPAADPLLVPPAYRNTAYSRIAAGNSHVCAVRGSYFSDRASGNVDCWEVAQTPNNSFIAKQTLAFYDQSVSNLQFNDVVSGDDFSCGGVRDGGLLCWGPNSKNLQVSNVSDSFSVLASGKNAICGVSNSSGELKCWGDPNSYSDPEAAGRVELISLSAGYGFMAIASSDYTTCGIREDDLLLDCWVVNASKPNFDPPLELSSPGLCQNRPCGDGEFAFNVSVLNEPDLTSLCVRQDLRICSPCGSNCSQGFFLSSPCAFNNDRVCTACSLCQNSSCWSVCGIHPSTPLHLHHFLRWLLIIGSSALGFLLILVCGCVFPRFLGKRTKKQSNKSCMGKMEQEDDGDLNGGVAINSTPSIASCPGVPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAALGDGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLVGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWTLRLKIAMQVAKGLDYLHRELSPPVPHRDLKTSNILLDSQWGARISDFGLITSTDKDLPGDLDTDVYNFGIVLLEILSGRKACDRDFNPPDIVEWAVPLIKQGKAAAIIDRYTALPRNVEPLLRLADIAELSVRENPAERPPLPDIASWLEQIVKDGLIL 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30252g00020 719 SUPERFAMILY RCC1/BLIP-II 22 263 IPR009091 -
Stsc30252g00020 719 SMART serkin_6 463 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30252g00020 719 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 294 349 IPR001368 GO:0005515
Stsc30252g00020 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Stsc30252g00020 719 FunFam serine/threonine-protein kinase-like protein CCR1 433 540 - -
Stsc30252g00020 719 PANTHER OS01G0750732 PROTEIN 299 714 - -
Stsc30252g00020 719 FunFam Serine/threonine-protein kinase-like protein CCR1 618 716 - -
Stsc30252g00020 719 ProSitePatterns Protein kinases ATP-binding region signature. 469 491 IPR017441 GO:0005524
Stsc30252g00020 719 Gene3D - 4 141 IPR009091 -
Stsc30252g00020 719 Gene3D Transferase(Phosphotransferase) domain 1 619 716 - -
Stsc30252g00020 719 Gene3D Transferase(Phosphotransferase) domain 1 541 618 - -
Stsc30252g00020 719 SUPERFAMILY Protein kinase-like (PK-like) 439 710 IPR011009 -
Stsc30252g00020 719 Pfam Protein kinase domain 463 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30252g00020 719 Gene3D Phosphorylase Kinase; domain 1 436 540 - -
Stsc30252g00020 719 Gene3D - 144 287 IPR009091 -
Stsc30252g00020 719 ProSiteProfiles Protein kinase domain profile. 463 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30252g00020 Stsc-Chr30252 101035 103281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30252g00020 1 711 Receptor kinase-like Gene Family AT3G59420 30.075 1.24e-100 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc30252g00020 Pkinase 1.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30252g00020 - - aip:107626497 1227.62