Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30252g00019 | ATGGGTAACATAGGAAGTAGCGGTGCCACCAACCGCAGAAGACACGGTGGTGGAGGTGCCGGAAGTGGACGGAGGATCCATCCTCCACCTCCTCCTCCTCCGCCGGTGACGCCACAGCCGGAAATCACAGCCAATCGGTTTGTGTACCCTGCTGCTGCCACTCCGTATCATAATTATCCCGGTTATTATCCGCCACCGGTGCCTTTGCCGGCGCCGTACGACCACCACCACCGGCCAGCAGCGGTAGAGCCGATGTGGGGGCGGTATCCTCCGCCGGCAGCGCCTATGCCTCCGACGCCGTATGTGGAGCACCAGAAGGCGGTTACTATAAAGAATGATGTGAACATCAAGAAGGAAACTTTGAGGATTGAGGCTGATGAAGGCAACCCTGGGAAGTTCCTTGTTTCATTCACATTTGATGCAACCTTTTCTGGGAGCATTACCATAATTTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTTACTCCAACAAAGGAAGATGCACTTCCACCTGTTACTGTAAATTTCCAGCATGGTCTTGGCCAGAAGTTTAGGCAGCCAGCTGGAACCGGTATTGATTTTTCGCTATTTGAGGAATCTGAGTTATTGAAAGTGGGAGAGATGGATGTCTATCCTCTAGTAGTTAAGGCAGATGCAACGTTAGGCGATGATGATGGATCAAATGAGACTCCAAATGATGGATCAAATGAAACTGGAAAGGAAGGATCTAACAGAACTGGAATAACAGGTAATACAAACTCACAGATAACAAAAGCAGTGTTTGAGAAGGAGAAAGGGGAATTCCAGGTGAAGGTTGTGAAGCAGATCTTGTGGGTGAATGGATTGAGGTATGAGCTGCAGGAGATATATGGCATCGGAAATTCAGTGGAGAGTGAAGTGGATGGAAATGACCCAGGCAAAGAATGTGTTATTTGCCTGTCAGAACCCAGGGATACAACTGTCCTTCCTTGCCGTCACATGTGCATGTGTAGCGGATGTGCCAAGGTTTTGAGGTTCCAGACAAATAGGTGTCCAATCTGCAGACAACCAGTTGAGAGACTTTTGGAGATCAAGGTTGGGCCTGAACCCGAACCCCAACCTCAACCCCAGGAGTGA | 1116 | 0.4937 | MGNIGSSGATNRRRHGGGGAGSGRRIHPPPPPPPPVTPQPEITANRFVYPAAATPYHNYPGYYPPPVPLPAPYDHHHRPAAVEPMWGRYPPPAAPMPPTPYVEHQKAVTIKNDVNIKKETLRIEADEGNPGKFLVSFTFDATFSGSITIIFFAKEGEGCILTPTKEDALPPVTVNFQHGLGQKFRQPAGTGIDFSLFEESELLKVGEMDVYPLVVKADATLGDDDGSNETPNDGSNETGKEGSNRTGITGNTNSQITKAVFEKEKGEFQVKVVKQILWVNGLRYELQEIYGIGNSVESEVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEPQPQPQE | 371 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30252g00019 | 371 | MobiDBLite | consensus disorder prediction | 25 | 40 | - | - | |
Stsc30252g00019 | 371 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 293 | 358 | IPR013083 | - | |
Stsc30252g00019 | 371 | PANTHER | MAHOGUNIN | 1 | 358 | IPR045194 | GO:0061630 | |
Stsc30252g00019 | 371 | Pfam | Zinc finger, C3HC4 type (RING finger) | 307 | 353 | - | - | |
Stsc30252g00019 | 371 | SUPERFAMILY | RING/U-box | 308 | 354 | - | - | |
Stsc30252g00019 | 371 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 293 | 358 | - | - | |
Stsc30252g00019 | 371 | ProSiteProfiles | Zinc finger RING-type profile. | 309 | 348 | IPR001841 | - | |
Stsc30252g00019 | 371 | CDD | mRING-HC-C3HC5_MGRN1-like | 307 | 348 | IPR045195 | - | |
Stsc30252g00019 | 371 | MobiDBLite | consensus disorder prediction | 225 | 251 | - | - | |
Stsc30252g00019 | 371 | SMART | ring_2 | 309 | 347 | IPR001841 | - | |
Stsc30252g00019 | 371 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Stsc30252g00019 | 371 | MobiDBLite | consensus disorder prediction | 221 | 251 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30252g00019 | Stsc-Chr30252 | 94903 | 98200 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30252g00019 | 87 | 328 | C3H Transcription Factor Family | AT3G09770 | 62.500 | 5.38e-100 | 298 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30252g00019 | - | - | aip:107626498 | 625.935 |