Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30252g00019 ATGGGTAACATAGGAAGTAGCGGTGCCACCAACCGCAGAAGACACGGTGGTGGAGGTGCCGGAAGTGGACGGAGGATCCATCCTCCACCTCCTCCTCCTCCGCCGGTGACGCCACAGCCGGAAATCACAGCCAATCGGTTTGTGTACCCTGCTGCTGCCACTCCGTATCATAATTATCCCGGTTATTATCCGCCACCGGTGCCTTTGCCGGCGCCGTACGACCACCACCACCGGCCAGCAGCGGTAGAGCCGATGTGGGGGCGGTATCCTCCGCCGGCAGCGCCTATGCCTCCGACGCCGTATGTGGAGCACCAGAAGGCGGTTACTATAAAGAATGATGTGAACATCAAGAAGGAAACTTTGAGGATTGAGGCTGATGAAGGCAACCCTGGGAAGTTCCTTGTTTCATTCACATTTGATGCAACCTTTTCTGGGAGCATTACCATAATTTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTTACTCCAACAAAGGAAGATGCACTTCCACCTGTTACTGTAAATTTCCAGCATGGTCTTGGCCAGAAGTTTAGGCAGCCAGCTGGAACCGGTATTGATTTTTCGCTATTTGAGGAATCTGAGTTATTGAAAGTGGGAGAGATGGATGTCTATCCTCTAGTAGTTAAGGCAGATGCAACGTTAGGCGATGATGATGGATCAAATGAGACTCCAAATGATGGATCAAATGAAACTGGAAAGGAAGGATCTAACAGAACTGGAATAACAGGTAATACAAACTCACAGATAACAAAAGCAGTGTTTGAGAAGGAGAAAGGGGAATTCCAGGTGAAGGTTGTGAAGCAGATCTTGTGGGTGAATGGATTGAGGTATGAGCTGCAGGAGATATATGGCATCGGAAATTCAGTGGAGAGTGAAGTGGATGGAAATGACCCAGGCAAAGAATGTGTTATTTGCCTGTCAGAACCCAGGGATACAACTGTCCTTCCTTGCCGTCACATGTGCATGTGTAGCGGATGTGCCAAGGTTTTGAGGTTCCAGACAAATAGGTGTCCAATCTGCAGACAACCAGTTGAGAGACTTTTGGAGATCAAGGTTGGGCCTGAACCCGAACCCCAACCTCAACCCCAGGAGTGA 1116 0.4937 MGNIGSSGATNRRRHGGGGAGSGRRIHPPPPPPPPVTPQPEITANRFVYPAAATPYHNYPGYYPPPVPLPAPYDHHHRPAAVEPMWGRYPPPAAPMPPTPYVEHQKAVTIKNDVNIKKETLRIEADEGNPGKFLVSFTFDATFSGSITIIFFAKEGEGCILTPTKEDALPPVTVNFQHGLGQKFRQPAGTGIDFSLFEESELLKVGEMDVYPLVVKADATLGDDDGSNETPNDGSNETGKEGSNRTGITGNTNSQITKAVFEKEKGEFQVKVVKQILWVNGLRYELQEIYGIGNSVESEVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEPQPQPQE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30252g00019 371 MobiDBLite consensus disorder prediction 25 40 - -
Stsc30252g00019 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 358 IPR013083 -
Stsc30252g00019 371 PANTHER MAHOGUNIN 1 358 IPR045194 GO:0061630
Stsc30252g00019 371 Pfam Zinc finger, C3HC4 type (RING finger) 307 353 - -
Stsc30252g00019 371 SUPERFAMILY RING/U-box 308 354 - -
Stsc30252g00019 371 FunFam probable E3 ubiquitin-protein ligase LOG2 293 358 - -
Stsc30252g00019 371 ProSiteProfiles Zinc finger RING-type profile. 309 348 IPR001841 -
Stsc30252g00019 371 CDD mRING-HC-C3HC5_MGRN1-like 307 348 IPR045195 -
Stsc30252g00019 371 MobiDBLite consensus disorder prediction 225 251 - -
Stsc30252g00019 371 SMART ring_2 309 347 IPR001841 -
Stsc30252g00019 371 MobiDBLite consensus disorder prediction 1 41 - -
Stsc30252g00019 371 MobiDBLite consensus disorder prediction 221 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30252g00019 Stsc-Chr30252 94903 98200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30252g00019 87 328 C3H Transcription Factor Family AT3G09770 62.500 5.38e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30252g00019 - - aip:107626498 625.935