Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30252g00017 ATGATCAAATTGGAACAAGAAGGTGTCATTATTATTACCCCTCAGAAGTCAGAAGTCAGAAGCAGAACCATAATAATAAGCACTACTTGTCTCAATTTGTATGTAAGTTGTTGTTTCCCATTAAATTGCATTATGGAAACTGAAGCTCCTCAAGACAAAAAGGATAATAGCGCTGATCACACCACAATCCAAAAGGGTCCAGAATCATCTGAAATAACTGAGGAACTCCCAAGTAGACAACATGGGACTATGAAAAACCTCATCTTGGAGATTCCAAAAGCAAACATTGTGGATGAAGATTTTGTGAGGATTAACATGCCTCTAACTCCTCCTCCAAGAAAAGTGGCCTTTTCACCATGCCCAAGCCCTGCTTTCTCCAGAGTCAATGAGTCACCAGGCCCTTCATCATCAAGGAATAATAGACCAACTATTAAAACTCTACTCCCCAAAATCAATCTAAAAATCAGGAGCACAAGCTCACAGCACAAGATTGAAAAGGCTGCTTTTCTTGCCCTTGAAGGTTCACCAAAGAAGCCTCGTCTTCTGAGGACATTGTCACTCACAAAGCTGATCACGCCTAGAGGGAAGAACACAGCATCCTTGCCTGCAACACCGATTGCTCACTCTAATCCCGGCTCCACACATGGAGGGAATGCTGCTTATTTGGCTTCAATTGATAAAGGGATCCATTTACCAATGCATCGTTCTCGTTCAGTTCCAGCACTTAACAAAGCAGGGAGCACAGGTGTAGGTGGAATGTTTCGTATAATTCCAACCACACCAAGATTGGATGAGAAAATTGACACACCAACATCTATGACATCTCCATCTGGTGATGATAGTGTTGAGAATGAGGATGGTGGGGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCTGATGATACTCTTAAATTAGAGTGTAGTTGCAAAGGTGAACTTTCACTGGCTCACAAACAATGTGCAGTTAAATGGTTTGGCATTAAAGGAAACAGAACATGTGATGTGTGCAAGCAACAAGTTCAGAATTTACCTGTCACTCTCTTGCGGCTTCAAACTGCACCTAGAGCTCAACATGCTGATATTTCTCAAACAAGGGTTTGGCAGGAAGCTCCCATTCTTGTAATTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAGTATGGGTTCCGGTGCTGTTGCCATGTCCCTTCCATTTTCTTGTATACTAGGTCTTCTTGCTAGCATGACATCTACAACAATGGTGAGGAGAAATCATGTTTGGGTTTATGCAACTGTGCAGTTTGTTCTGGTGGTTGTGAGTGGACATCTTTTGTATTCATTGGTTCACATGGAAGCTGTTCTAGCTATTTTGCTTGCCACATTTACTGGGTTTGGGGCTGTGATGTTAGTAGCTTGTGTTGTTAGTGAGATATCAAATTGGAGGAGAACACGTGTTGGTGAGTCGAATCAAGAGCAGGAGGGAGTGGCAGGTGATGAATCCGAGAATCCTGAAAGTAATTTGAGAGACTCTCCTGTGCATGTGCTCCCACTGGTGTGA 1584 0.4242 MIKLEQEGVIIITPQKSEVRSRTIIISTTCLNLYVSCCFPLNCIMETEAPQDKKDNSADHTTIQKGPESSEITEELPSRQHGTMKNLILEIPKANIVDEDFVRINMPLTPPPRKVAFSPCPSPAFSRVNESPGPSSSRNNRPTIKTLLPKINLKIRSTSSQHKIEKAAFLALEGSPKKPRLLRTLSLTKLITPRGKNTASLPATPIAHSNPGSTHGGNAAYLASIDKGIHLPMHRSRSVPALNKAGSTGVGGMFRIIPTTPRLDEKIDTPTSMTSPSGDDSVENEDGGEDIPEEEAVCRICMVELGEGADDTLKLECSCKGELSLAHKQCAVKWFGIKGNRTCDVCKQQVQNLPVTLLRLQTAPRAQHADISQTRVWQEAPILVIVNMLAYFCFLEQLLVSSMGSGAVAMSLPFSCILGLLASMTSTTMVRRNHVWVYATVQFVLVVVSGHLLYSLVHMEAVLAILLATFTGFGAVMLVACVVSEISNWRRTRVGESNQEQEGVAGDESENPESNLRDSPVHVLPLV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30252g00017 527 MobiDBLite consensus disorder prediction 497 519 - -
Stsc30252g00017 527 CDD RING_CH-C4HC3_MARCH 298 347 - -
Stsc30252g00017 527 MobiDBLite consensus disorder prediction 264 289 - -
Stsc30252g00017 527 Pfam RING-variant domain 298 346 IPR011016 GO:0008270
Stsc30252g00017 527 SMART ringv_2 297 347 IPR011016 GO:0008270
Stsc30252g00017 527 SUPERFAMILY RING/U-box 294 350 - -
Stsc30252g00017 527 MobiDBLite consensus disorder prediction 62 79 - -
Stsc30252g00017 527 MobiDBLite consensus disorder prediction 265 281 - -
Stsc30252g00017 527 ProSiteProfiles Zinc finger RING-CH-type profile. 290 353 IPR011016 GO:0008270
Stsc30252g00017 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 354 IPR013083 -
Stsc30252g00017 527 PANTHER OS02G0165000 PROTEIN 45 501 - -
Stsc30252g00017 527 MobiDBLite consensus disorder prediction 51 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30252g00017 Stsc-Chr30252 87059 89851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30252g00017 295 353 C3H Transcription Factor Family AT2G37950 42.373 3.87e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30252g00017 - - gmx:100787963 615.92