Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30252g00013 ATGGGGAAGACAGGGAAATGGCTTAGAAACTTATTGACGGGGAAGAAAGAAAAAGAGAAATACAAGGGAAAATGTGCAACCATTAGCCCAGTTGTTCTGTCAAATCCAACAACTCCAAAGGAGAAAAGAAGGTGGAGTTTCAGGAGATCATCAGCCACAGCTACAGCTTCCAAGGAATTGAATTTTGTGGAAGCAAAAGCCACTGCTGCTTCGATGACAGTGCAAACTGCAGCTGCCACAGATGCACAACAGAATGAGCAGAAGAGGCATGCCATGGCCGTGATCAGCTTGACTTCCAGTTCTAATGAAACAACAAGAAGCATTGAAGAAGCTGCTGCCATTAAAATTCAATCTGTGTTTAGGTCCTACTTGGCAAGAAAAGCATTGTGTGCTCTTAGAGGGCTAGTGAAGTTGCAGGCACTGGTAAGGGGTTACTTGGTGAGAAAACAGGCCAAAGATACATTAAGGTGCATGCAGGCTTTGCTCATAGCTCAAGCCAGAGCTCGTGCTTCCAGGGTTCCAACTGAATCAGAAGGGAAGCTCAATCCAATGCATTCAACCTACAGAAAAACATTATTAGCGGATAATGTGTTCAGGCATATGTACAACGAAAATGAGAGAGGCATGGAAGACAACATCAAGATTGTGGAGATGGATTTTTGTGAATCCAAAGGAAACTCAAGAGGAAGAAACAGCACATCAAATCACGGATACCGCCATAGATATTCAACATATTATTCACCAAATGGTTCTTCATACTTAAAAGAAGCAGGAAGCTACAAGGCATCGCCAGCACCTTCAGCAATGACGGAGTTCAGTCCAAGAGCATGCAGTGGCCACTTTGAGGATTGTGGAGCCTTCAACACAGCACAAAGCAGTCCTCATTATTACTCAGCAGTTTCAAGGGAAGACGTTTTGAATCTTTCGTTTGCTTTTCCTAAGCCAAATTATGCAGCAGAATCCATGTTGTATGACTACCCTTTTTTCCCAAATTACATGGCTAACACTGAATCATCAAGGGCCAAAGTTAGATCACACAGTGCACCAAGGCAAAGGCCCGATTCATTCGAGAGGCAGCCCAGCAGGCGAAGAGCTTCGGTGGAAGGAAGAAGTGTCCCGAGGCCTATGAGGATGCAGAGGTCCTCTTCAAATGTTGGTCTCACTGAGCAAAACTACCAATATCCTTGGTCGATGAAGCTCGATAGGTCAAATGTTAAACTCTAA 1224 0.4428 MGKTGKWLRNLLTGKKEKEKYKGKCATISPVVLSNPTTPKEKRRWSFRRSSATATASKELNFVEAKATAASMTVQTAAATDAQQNEQKRHAMAVISLTSSSNETTRSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGYLVRKQAKDTLRCMQALLIAQARARASRVPTESEGKLNPMHSTYRKTLLADNVFRHMYNENERGMEDNIKIVEMDFCESKGNSRGRNSTSNHGYRHRYSTYYSPNGSSYLKEAGSYKASPAPSAMTEFSPRACSGHFEDCGAFNTAQSSPHYYSAVSREDVLNLSFAFPKPNYAAESMLYDYPFFPNYMANTESSRAKVRSHSAPRQRPDSFERQPSRRRASVEGRSVPRPMRMQRSSSNVGLTEQNYQYPWSMKLDRSNVKL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30252g00013 407 Pfam Protein of unknown function (DUF4005) 313 371 IPR025064 -
Stsc30252g00013 407 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Stsc30252g00013 407 SMART iq_5 131 152 IPR000048 GO:0005515
Stsc30252g00013 407 SMART iq_5 108 130 IPR000048 GO:0005515
Stsc30252g00013 407 MobiDBLite consensus disorder prediction 340 384 - -
Stsc30252g00013 407 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
Stsc30252g00013 407 MobiDBLite consensus disorder prediction 343 370 - -
Stsc30252g00013 407 PANTHER IQ-DOMAIN 5-RELATED 1 369 - -
Stsc30252g00013 407 Gene3D - 108 161 - -
Stsc30252g00013 407 Pfam IQ calmodulin-binding motif 111 129 IPR000048 GO:0005515
Stsc30252g00013 407 Pfam IQ calmodulin-binding motif 136 152 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30252g00013 Stsc-Chr30252 67018 68679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30252g00013 1 407 IQD Protein Family AT4G14750 43.155 2.13e-90 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30252g00013 - - gmx:100817667 470.314