Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30252g00004 ATGACTACCCCATCATCACCCGAACCCCTTGTGTTTACTGTGCGGAGGCGTAAGGCGGAGCTTGTGGCTCCGGCGAAACCCACCCCTCGCGAAGTGAAACTACTCTCAGATATAGACGACCAAGATGGACTCCGTTTCCAAATTCCGGTGATACAATTTTATCGGTGTGATCCATCGATGGAAGGGAAGGACCCCGTCGTGGTCATTAGAAAGGCTCTGGCTGAAGCACTTGTGTTTTATTACCCTTTTGCTGGCAGGCTTAGGGAAGGGCCTGCTCGGAAACTAATGGTGGACTGCACCGGCGAGGGTGTTCTCTTCATTGAGGCCGACGCTGATGTCACGCTTACCCAATTCGGCGATGCGCTTCAGCCTCCATTCCCCTGCTGGGAGGACCTCCTTTACGATGTTCCAGGCTCTGCACAAGTACTCAACACTCCCTTGCTCCTTATTCAGGTAACAAGGCTAAAGTGTGGTGGATTCATTTTTGCATTGCGTCTAAACCACACGATGAGTGATGCAGCGGGACTAGTCCAGTTCATGAGTGCAGTTGGCGAAATAGCCCGCGGGGCAGGTGAGCCTTTGGTGCCACCTGTATGGCGGAGGGAGCTGTTGAACGCAAGGGTACCGCCAAGAGTAACATGCATCCATCGGGAGTATGAGCAAGTCCCCGATACCAAGGGGACCATAATCCCGCTCGATGATATGGCCCACCGTTCCTTCTTCTTCGGTCCCACTGAGGTCGCTGCCATCCGTCGCCTCCTCCCTCCCCATCAACAGCGCTGCTCTGACTTTGAGATACTTACAGCTTGCTTATGGCGGTGCCGCACAATCGCCCTACAGCCCGACAGTGAAGAGGAGGTTCGCATAATTTGTATTGTGAATGCACGCGGCAAGTTCAACCCTCCGCTGCCTACTGGGTACTACGCGGATTTGATGGTGTTGAATGGGCGGCCCCATTTTACTGTTGTGAGGTCCTACTTGGTTTCAGATGTCACGCGCGCTGGCTTCGGAGAGGTGGACTTTGGGTGGGGGAGGGCTGCTTATGGTGGACCCGCCAAAGGGGGTGTTGGAGCCATTCCTGGTGTGGCCAGCTTTTATATACCCTTTACCAACGCCATGGGAGAGCACGGTTTGGTCATACCCATCTGTTTGCCATCTGACGCCATGGATAGATTTGTTCAAGAGTTGGAAATCATCCTTAACAACCATCACCATGTCACCGGAACCCCCACCTCTCCTTTTATCCCTTCTTCCTTATAA 1260 0.5349 MTTPSSPEPLVFTVRRRKAELVAPAKPTPREVKLLSDIDDQDGLRFQIPVIQFYRCDPSMEGKDPVVVIRKALAEALVFYYPFAGRLREGPARKLMVDCTGEGVLFIEADADVTLTQFGDALQPPFPCWEDLLYDVPGSAQVLNTPLLLIQVTRLKCGGFIFALRLNHTMSDAAGLVQFMSAVGEIARGAGEPLVPPVWRRELLNARVPPRVTCIHREYEQVPDTKGTIIPLDDMAHRSFFFGPTEVAAIRRLLPPHQQRCSDFEILTACLWRCRTIALQPDSEEEVRIICIVNARGKFNPPLPTGYYADLMVLNGRPHFTVVRSYLVSDVTRAGFGEVDFGWGRAAYGGPAKGGVGAIPGVASFYIPFTNAMGEHGLVIPICLPSDAMDRFVQELEIILNNHHHVTGTPTSPFIPSSL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30252g00004 419 Gene3D - 13 220 IPR023213 -
Stsc30252g00004 419 PANTHER ACYL TRANSFERASE 4 324 397 - -
Stsc30252g00004 419 Gene3D - 318 405 IPR023213 -
Stsc30252g00004 419 Gene3D - 221 317 IPR023213 -
Stsc30252g00004 419 Pfam Transferase family 14 312 - -
Stsc30252g00004 419 Pfam Transferase family 324 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30252g00004 Stsc-Chr30252 21952 24416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30252g00004 14 396 Monolignol Biosynthesis Gene Families AT5G48930 27.540 8.16e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30252g00004 K19861 - gmx:100797017 679.863