Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30251g00022 ATGGAGAAGCCACCGCAGAAAACTAACTCCTCCGCCGCCACCGGCTGCCGCCGCAATGGCAACGAAACAAAGTACCTTGGCGTGAGGCAGAGGCCGTCCGGGCGGTACTCGGTGGAGATAAGGGACCCTTGGTCCAAGAAACAGCGGTGGCTCGGCACCTACACCACACCGGAGGAAGCCGCTCGCGTGTACGACGCGGCCGCCCGAGCCTTTCGTGGCCATAAAGCCCGCACGAATTTCCTGGATTATAACAACTGCTCCAAAGAAAACCCTAACCCTTTCTCTTGTTTTTCTTCCTCCTCAGAAATTCTTCTTGTTCGGTTTCTTCTCGATTTCATCAACTCCTCTTCAAACCCTTCTTTGGTGTTTTCCGCTCAGCAACTCTACGATGAGTTGTTGCTGAACGGAATAGGCTCTTCTTCATCACGGAATTATAACAACAATAATTATTATTATAATCCTGATCAGATGATGATGAACAGTAGTAGTTATAATAATAATGACTTTGTTCCTTGTGGTGATTTTGCTATGCAAACTAATTTGGGTGGTGGTGGTGGTGTTAATAGTGCTACTGTGGTTGAAAATGGTAACTTGATGGAAGAAAGAAGTGTGTTTGATGAGTTGCATAATGAGATTCTTGATCATTATGATGGTGATATCGATGATGAGGAGAATCTTCTTGCGGAATTATTCTGGATGAACTACTAA 708 0.4562 MEKPPQKTNSSAATGCRRNGNETKYLGVRQRPSGRYSVEIRDPWSKKQRWLGTYTTPEEAARVYDAAARAFRGHKARTNFLDYNNCSKENPNPFSCFSSSSEILLVRFLLDFINSSSNPSLVFSAQQLYDELLLNGIGSSSSRNYNNNNYYYNPDQMMMNSSSYNNNDFVPCGDFAMQTNLGGGGGVNSATVVENGNLMEERSVFDELHNEILDHYDGDIDDEENLLAELFWMNY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30251g00022 235 MobiDBLite consensus disorder prediction 1 21 - -
Stsc30251g00022 235 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Stsc30251g00022 235 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Stsc30251g00022 235 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Stsc30251g00022 235 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 139 - -
Stsc30251g00022 235 MobiDBLite consensus disorder prediction 1 18 - -
Stsc30251g00022 235 Pfam AP2 domain 23 74 IPR001471 GO:0003700|GO:0006355
Stsc30251g00022 235 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Stsc30251g00022 235 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Stsc30251g00022 235 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Stsc30251g00022 235 SMART rav1_2 24 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30251g00022 Stsc-Chr30251 141522 142229 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30251g00022 12 86 AP2-EREBP Transcription Factor Family AT1G28360 57.500 4.74e-23 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30251g00022 AP2 1.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30251g00022 - K09286 aip:107611489 218.009