Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30251g00019 ATGGAGAAGCCACCGCAGAAAACTAACTCCTCCACCGCCACCAACCGCCGCCGCAAGCAAGAACGTGTGAATGGCAACGGAACAAAGTACCGTGGCGTGAGGCAGAGGCAGTCGGGGCGGTACTCGGCGGAGATAAGAGACCCTTGGTCCAAGAAACAGCGGTGGCTCGGCACCTACACCACACCGGAGGAAGCCGCTCGCGTGTACGACGCCGCCGCCCGAGCCTTTCGTGGCCATAATGCCCGCACCAATTTCCTCGATTATAATGATAACAAGTACCCCGAAGAAAACCCTAACCCTTTCTCTTCTTTTTCTTCCTCCTCCGACATTCTTCTTCTCCGGTTTCTTCTCGACTTCATCAACTCCTCTAATTCCAACCCTTTTTTGGTAATTTCCGCTCGGCAACTCTATGACCAGTTGTTGCTGAACGGAATACGCTCTTCTTCAACTTCATCTCCATCACCGAATTATATCAACAACAATAATTATTATCATCCTGAGATGATAATGATAAATAATAATAACTTTGTCCCCTTTGGTGATTTTCCCATGCAAACTAATTTCGGTGTTGGCGGTGGTGTTAATGCTAATGTGGTTGGAAATGGTAATTTGATGGAAGAAAGAAGTGTGTTCCATGAGTTGCATGATGAGATTCTTGATCATTATGATGCTGATGAGGAGGATCTTCTTGCCGCATTCTGGATGTGA 708 0.4732 MEKPPQKTNSSTATNRRRKQERVNGNGTKYRGVRQRQSGRYSAEIRDPWSKKQRWLGTYTTPEEAARVYDAAARAFRGHNARTNFLDYNDNKYPEENPNPFSSFSSSSDILLLRFLLDFINSSNSNPFLVISARQLYDQLLLNGIRSSSTSSPSPNYINNNNYYHPEMIMINNNNFVPFGDFPMQTNFGVGGGVNANVVGNGNLMEERSVFHELHDEILDHYDADEEDLLAAFWM 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30251g00019 235 Pfam AP2 domain 28 79 IPR001471 GO:0003700|GO:0006355
Stsc30251g00019 235 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Stsc30251g00019 235 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Stsc30251g00019 235 MobiDBLite consensus disorder prediction 1 43 - -
Stsc30251g00019 235 FunFam ethylene-responsive transcription factor RAP2-11 28 87 - -
Stsc30251g00019 235 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Stsc30251g00019 235 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Stsc30251g00019 235 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Stsc30251g00019 235 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Stsc30251g00019 235 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Stsc30251g00019 235 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30251g00019 Stsc-Chr30251 131122 131829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30251g00019 25 93 AP2-EREBP Transcription Factor Family AT1G28370 62.319 3.70e-24 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30251g00019 AP2 4.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30251g00019 - - aip:107611489 220.705