Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30251g00015 ATGGCGACCTCATCGGCGTCAGCCAAGCGCTGCCACTATGAGGTTCTTGGCCTCCCCCGTGACTGCACCCCGGAGGAGATCCGCTCCGCCTACCGCCGCCTCGCCCTGCAGCGCCACCCTGACAAGCTCGTCCAATCAGGTATCTCCCAATCGGAAGCCACCGCGCAGTTTCAGGAGCTTCAGCACGCCTATGAGGTCCTCTCTGATCCCAAGGAACGCTCATGGTACGATTCTCACCGCTCTCAGATCCTTTTCTCCGATCCCGACACCCTCCGCAACTCCTCCGTCCCCGACCTCTTCTCGTTTTTCTCCAATACCATCTACTCCGGCTACTCCGATTCCGGTAGAGGCTTCTACAAGGTGTATTCCGATGTTTTCGATAAGATTCACGCAAATGAGATCAATTTCGTGAAGAAGTTAGGGTTAGGTGTTGATTCTGTTAGGCAAGCTCCTGTTATGGGGAATTTGGATAGCCCTTACGAGCAGGTTACTGCGTTTTATGGTTATTGGTTAGGGTTTTCGACTGTTATGGATTTTTGCTGGGTTGATGAGTATGATGTTTCGGCCGGTCCGAACCGGCGGTCGCGGCGGCTTATGGAGGAGGAGAATAACAAGGTAAGGAAGAAGGCGAGGAGGGAGTACAATGATACTGAGCCAGAGTGGGCGAAAGTGGATGAGGGCGATGATGTGGAGGATGATTTGTGGTTTGAGGAGGCAGAGGAGGGGGGAAAGAAGGGTGCTGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAAGGTTGCCGAGTTCAAGGATTCGATTGATGATGAGGATGAAGAGGTTGCTGAGGAGGATTTGGAGAGTGAGGTTGAGGTGGATGGAAGAGAAGGGAAGGAGGGGTTGGAGAGTAAAGAGGATGCTGATCATGGGGTTGAGGATTTGGAAGAGAGGATTAGAGATGGTCTCAATGTTGCAGAGGAGAGCACTAGTGATGGAGATGAGCTTGACGATGAGGATGACGACGAAGAATTTTATGATGCTTCGCATGAAAAGGAAGGTAATGTGGTTGGTGTGTCTGTAAATGGTGATGATGATGATGAAATTGGTGCTCTTGAAGCAATGGTGGCCGGTCACAAGAGCAGAAAGCCACGTGCTTCAATGCGCAAGCCCAATGCCTCAGTAGTGCCTCCAACTCAAATAGAGAATGAAGATGATGGGGTTGGTCCTATGGAATATGAAAACCGAAAGGGCGCAAGAAAGAAACGCAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGTGAAGAATCTCACACGGCAGCTGTCAATGGCGATGAAGAGCATAATAGCAACAACGATGATGGGAATGACAATTCTCATGCAGAAGAGTCTTCTTTCCAATATAATGTGGAGAATGATATTAATGGTAAAGAGAACGATTATGATGGTAGAGATAAGACTTCAAATCAACCAGCTGAGAAGAAAGGAGCTGCAAGGGACACAAAAACCAAGGCGAAAACTTCCTCAAAAGGAAGAAAAGCCAAGGGTGCATCAAAGAATCTTGGCAATACTTGTGAGACTTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAACATCTTGGAGATTCTGGGCATGCAAAAATAAAAAGTAGATAG 1695 0.4802 MATSSASAKRCHYEVLGLPRDCTPEEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQHAYEVLSDPKERSWYDSHRSQILFSDPDTLRNSSVPDLFSFFSNTIYSGYSDSGRGFYKVYSDVFDKIHANEINFVKKLGLGVDSVRQAPVMGNLDSPYEQVTAFYGYWLGFSTVMDFCWVDEYDVSAGPNRRSRRLMEEENNKVRKKARREYNDTEPEWAKVDEGDDVEDDLWFEEAEEGGKKGAEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKDSIDDEDEEVAEEDLESEVEVDGREGKEGLESKEDADHGVEDLEERIRDGLNVAEESTSDGDELDDEDDDEEFYDASHEKEGNVVGVSVNGDDDDEIGALEAMVAGHKSRKPRASMRKPNASVVPPTQIENEDDGVGPMEYENRKGARKKRRAKKEKGRKNCEESHTAAVNGDEEHNSNNDDGNDNSHAEESSFQYNVENDINGKENDYDGRDKTSNQPAEKKGAARDTKTKAKTSSKGRKAKGASKNLGNTCETCGEEFESRNKLHKHLGDSGHAKIKSR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30251g00015 564 MobiDBLite consensus disorder prediction 339 358 - -
Stsc30251g00015 564 MobiDBLite consensus disorder prediction 486 518 - -
Stsc30251g00015 564 MobiDBLite consensus disorder prediction 284 302 - -
Stsc30251g00015 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 280 IPR013087 -
Stsc30251g00015 564 Pfam Zinc-finger double-stranded RNA-binding 251 276 IPR022755 -
Stsc30251g00015 564 Coils Coil 272 292 - -
Stsc30251g00015 564 ProSitePatterns Zinc finger C2H2 type domain signature. 536 558 IPR013087 -
Stsc30251g00015 564 Gene3D DnaJ domain 1 92 IPR036869 -
Stsc30251g00015 564 MobiDBLite consensus disorder prediction 270 376 - -
Stsc30251g00015 564 SUPERFAMILY beta-beta-alpha zinc fingers 241 294 IPR036236 -
Stsc30251g00015 564 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Stsc30251g00015 564 SMART c2h2final6 534 558 IPR013087 -
Stsc30251g00015 564 SMART c2h2final6 251 275 IPR013087 -
Stsc30251g00015 564 CDD DnaJ 11 69 IPR001623 -
Stsc30251g00015 564 MobiDBLite consensus disorder prediction 389 564 - -
Stsc30251g00015 564 PRINTS DnaJ domain signature 31 46 IPR001623 -
Stsc30251g00015 564 PRINTS DnaJ domain signature 13 31 IPR001623 -
Stsc30251g00015 564 PRINTS DnaJ domain signature 52 72 IPR001623 -
Stsc30251g00015 564 MobiDBLite consensus disorder prediction 199 219 - -
Stsc30251g00015 564 Pfam DnaJ domain 12 77 IPR001623 -
Stsc30251g00015 564 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 4 217 IPR044648 -
Stsc30251g00015 564 Gene3D Classic Zinc Finger 240 298 - -
Stsc30251g00015 564 MobiDBLite consensus disorder prediction 440 471 - -
Stsc30251g00015 564 ProSitePatterns Zinc finger C2H2 type domain signature. 253 275 IPR013087 -
Stsc30251g00015 564 MobiDBLite consensus disorder prediction 303 338 - -
Stsc30251g00015 564 SUPERFAMILY Chaperone J-domain 10 76 IPR036869 -
Stsc30251g00015 564 SMART dnaj_3 10 72 IPR001623 -
Stsc30251g00015 564 SMART ZnF_U1_5 248 282 IPR003604 GO:0003676|GO:0008270
Stsc30251g00015 564 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Stsc30251g00015 564 MobiDBLite consensus disorder prediction 541 564 - -
Stsc30251g00015 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 534 563 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30251g00015 Stsc-Chr30251 98963 101469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30251g00015 1 564 C2H2 Transcription Factor Family AT1G74250 45.023 2.51e-162 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30251g00015 DnaJ 7.4e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30251g00015 K09506 - gmx:100788305 709.138