Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30251g00013 ATGGCTTTCTTCGGTCGAATTGGGAATTTACTGAGAAATGCTGCAAACAAGCAGATCAGTTCAGAATTGCGATCATCCCCGTCTATTTTCCAGGCAATACGGTGCATGTCGTCTGCTCCAAGCTCAAAACTGTTCATTGGAGGTGTTTCATATTCTACTGATGAACAAAGTTTGAGGGAGGCATTTTCAAGATATGGAGAAGTTGTTGATGCAAGGATAATTGTGGATCGTGATAGTGGTAGATCCAGGGGATTTGGCTTTGTTACTTTCAGTTCAGCTGAGGAGGCATCAAGTGCTATTCAAGCCTTGGATGGGCAGGATCTTCATGGCCGCCGGATTAGGGTAAACTATGCTAATGAAAGGCCCCGCTTTGGTGGTGGAGGCGGTAGTTTTGGTGGTTCTTATGGCAATGCACCATATGGTGCTGGAGGTGGTGCTGGCTATGGGGGTGCTTACAGTAACGCCCCATATGGTGGTGCTTCAGGTGGGGGTTATGGTGGCAATGCTGCTGGAGGTTATAGTGGAGGCGGCTATGGATCCGGTGCCAGTTATGGTCACAGTGGCTTTGACAATAACTATTCTGCTCCTGACAGTTTTGGAAGTAGCAGTGCTGAGGGAAGTGGAGGCTATGGTGGTAACAGTGGGAATTACGGTGTCGCTGGTGGTGTAGGAGGAAGTGATAGCTATGGCAATGCTCCTGGTTTTGATGCTGCTGCTGGTGTAGGTAGTCATGAAACATCTGCTGGTTTTGGTGGCAGTGCTGGTGGATTTGATGGAAGTGAGGGATCCGGAAATGGCAACAGTGGTCAACCAGATAACGAAGAAACCAGCAATGACAGCGGCGATCTGGACTCAGTAGAAGGAAATTACAGAGATGACAATGATGATACTGATAATTTTGCCAAGAGGGCTTGA 915 0.4798 MAFFGRIGNLLRNAANKQISSELRSSPSIFQAIRCMSSAPSSKLFIGGVSYSTDEQSLREAFSRYGEVVDARIIVDRDSGRSRGFGFVTFSSAEEASSAIQALDGQDLHGRRIRVNYANERPRFGGGGGSFGGSYGNAPYGAGGGAGYGGAYSNAPYGGASGGGYGGNAAGGYSGGGYGSGASYGHSGFDNNYSAPDSFGSSSAEGSGGYGGNSGNYGVAGGVGGSDSYGNAPGFDAAAGVGSHETSAGFGGSAGGFDGSEGSGNGNSGQPDNEETSNDSGDLDSVEGNYRDDNDDTDNFAKRA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30251g00013 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Stsc30251g00013 304 MobiDBLite consensus disorder prediction 260 276 - -
Stsc30251g00013 304 SUPERFAMILY RNA-binding domain, RBD 38 150 IPR035979 GO:0003676
Stsc30251g00013 304 MobiDBLite consensus disorder prediction 242 304 - -
Stsc30251g00013 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Stsc30251g00013 304 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 199 - -
Stsc30251g00013 304 SMART rrm1_1 43 116 IPR000504 GO:0003723
Stsc30251g00013 304 PRINTS Eggshell protein signature 125 140 - -
Stsc30251g00013 304 PRINTS Eggshell protein signature 204 222 - -
Stsc30251g00013 304 PRINTS Eggshell protein signature 38 54 - -
Stsc30251g00013 304 PRINTS Eggshell protein signature 152 162 - -
Stsc30251g00013 304 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 165 - -
Stsc30251g00013 304 CDD RRM2_NsCP33_like 43 118 - -
Stsc30251g00013 304 Gene3D - 13 137 IPR012677 -
Stsc30251g00013 304 MobiDBLite consensus disorder prediction 285 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30251g00013 Stsc-Chr30251 79566 82189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30251g00013 44 131 Eukaryotic Initiation Factors Gene Family AT2G36660 32.222 1.79e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30251g00013 K12741 - gmx:100799124 244.202