Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30251g00003 ATGATGATGATGATTGAAACTAACTCAACCAAAAGCAGCAGCTACCAAGCCAAGCAAGAAGACGCCACCGCCACCGCCGCCACCGGCGCTGACAAATCCTCAAAATCTTTACCGTCCACTTCGTCAAGACAATGGACAGCGTTCAGAAATCCAAGAATCGTTCGAGTTTCGCGGTCTTTGGGAGGGAAAGACAGGCACAGCAAGGTTTGCACCATTAGAGGCCTAAGAGACCGGAGGATTCGGCTTTCGGTTCCGACTGCGATTCAGTTATACGATCTCCAACACCGGCTCGGCGTTGGTCAACCCAGTAAGGTCATTGATTGGTTGCTTGAAGCCACCAAACTCGACATTGATAAGCTTCCGCCACTTCAAATCCCTAATAATCAGGGTTTCGCCCAATTCCACCACCATCAACAAACCCTAATTCCCCTTTCTCATCATCACGAACCATCAGTTATCGCTAGCAGTTCCCCTTTTTCTCTTGGAGGATTCTATGATGGAAACTCTGCAAGGTTTTGGGACACGGATTCTTCTTCAATTAGGCTAAAAGGTAAAGAATCTGAGAAAGGGAAATGGATCAAAACAAATCAAGAACAACATGATGATGGTGATGATGATGGAAATAATCAAGAAGGATTATTGTTGTTGAACAATGCTATGGGATATAATAATAATAATAATAATTCTAATAATTCTTCTTTGGATCCTTCAAGCTTAACTTTATCATCATCATCATCACAATTTGGAAGCCATGTGTTATTGTTAGATCCCCATTCTTCTAACTTTTTGCAGCAATTTTCTTCTTCTTCAACAACACCATCAGTTTTCAATCCCTATTGTGCTCCATTCATAGCTAATAATAATTCATCATCTTCGTCGTCGTCATCAACAGTAGTGGAAAGTAATAACAGTGAAGCAATAAGACTTCATCAGATCTTGAGTAATCATCATCATCATCCCTTTATTCCATCATCTTCTCTACTTTTTAACTCATCAATTATCAGTAACAACAATTCGGCTGCTGCTACTATCAGACGGGTTTCAATGCCATTTAGTTCTAAGCTTCTTGATTCAGATAATGACAACAACAACACTGGAAGCAACCAACAAAATCATCATCACCATAAAGGTACGTAG 1137 0.4072 MMMMIETNSTKSSSYQAKQEDATATAATGADKSSKSLPSTSSRQWTAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQHRLGVGQPSKVIDWLLEATKLDIDKLPPLQIPNNQGFAQFHHHQQTLIPLSHHHEPSVIASSSPFSLGGFYDGNSARFWDTDSSSIRLKGKESEKGKWIKTNQEQHDDGDDDGNNQEGLLLLNNAMGYNNNNNNSNNSSLDPSSLTLSSSSSQFGSHVLLLDPHSSNFLQQFSSSSTTPSVFNPYCAPFIANNNSSSSSSSSTVVESNNSEAIRLHQILSNHHHHPFIPSSSLLFNSSIISNNNSAAATIRRVSMPFSSKLLDSDNDNNNTGSNQQNHHHHKGT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30251g00003 378 MobiDBLite consensus disorder prediction 185 207 - -
Stsc30251g00003 378 MobiDBLite consensus disorder prediction 211 240 - -
Stsc30251g00003 378 Pfam TCP family transcription factor 62 189 IPR017887 -
Stsc30251g00003 378 MobiDBLite consensus disorder prediction 185 240 - -
Stsc30251g00003 378 MobiDBLite consensus disorder prediction 355 372 - -
Stsc30251g00003 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 374 IPR005333 GO:0003700
Stsc30251g00003 378 MobiDBLite consensus disorder prediction 1 44 - -
Stsc30251g00003 378 ProSiteProfiles TCP domain profile. 62 120 IPR017887 -
Stsc30251g00003 378 MobiDBLite consensus disorder prediction 355 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30251g00003 Stsc-Chr30251 28921 30057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30251g00003 45 224 TCP Transcription Factor Family AT5G60970 48.756 2.72e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc30251g00003 TCP 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30251g00003 - - ahf:112722599 327.405