Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30250g00020 | ATGCCACCTCGTTGGTTTACGACAGCGTCAACGTCGGTGAACGAGGTCTACTTCGACATGGAGAGCAATGGCTTCGAAGAGGAGGAGGAGGAACCCCTCACCGTGAAATGTCGTTCGTGCGATGAAGAGTACGAAGCTGATGAGGCCGGAACATGCAAAGCCTGCTACGAAAAGGCTAACGAGAATCAGGAGAAGCTGAAGCGTGAGATCAACGATCTCAAATCCAAGGTTTCGTTTCTCAAGCTTCCCTCACCGTCTCAGGATTCCGTCACGTACGGACACAGTCTTGGCACCACCGACGTCGTTCTTGTTCCCTCCGGTGACCCCTCTGCTCCGGCTGATGCTAGCGTTCCCGCTCATAGGGCTGTTCTGGCTATTCGCTCACCGGTTTTCAAAGCAATGCTTGAGAATTACATGGAGGAAAGCCAGAGTGGCACTATCAATATCGCCGATGTAAAATGGGACACCCTTCGAGAATTTGTCAACTACTTATACACTGCAGAAGCAACTCTGGATGAGCAAAAGGCCCATGAGCTGTTAAAGCTTGGAGAAAAGTATCAGGTGAATCACCTGAAGGAACATTGTGAGAAGTATTTGATCTCTACATTGAAGTTGGACAATAATGCTATGGTGAACTACCCCTTTGCATGTTCTTACAATGCCAAAGAATTGCGAAGAGCATGCCTTGAAGAGCTCACAGCAAACATGGAGATGCTGAAAAAGAATGAAATGTATCCTGAGATGGTGCAGAATTACCCTGAGCTTGTTGTGGATATATATGAATATTATCTTTCAAAACAGCCTGATATTCTAGCATGCTTGGGGGCAACTAACAATGGCACAGGAAACTGA | 852 | 0.4707 | MPPRWFTTASTSVNEVYFDMESNGFEEEEEEPLTVKCRSCDEEYEADEAGTCKACYEKANENQEKLKREINDLKSKVSFLKLPSPSQDSVTYGHSLGTTDVVLVPSGDPSAPADASVPAHRAVLAIRSPVFKAMLENYMEESQSGTINIADVKWDTLREFVNYLYTAEATLDEQKAHELLKLGEKYQVNHLKEHCEKYLISTLKLDNNAMVNYPFACSYNAKELRRACLEELTANMEMLKKNEMYPEMVQNYPELVVDIYEYYLSKQPDILACLGATNNGTGN | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30250g00020 | 283 | CDD | BTB_POZ_ZBTB_KLHL-like | 99 | 186 | - | - | |
| Stsc30250g00020 | 283 | SMART | BTB_4 | 99 | 203 | IPR000210 | GO:0005515 | |
| Stsc30250g00020 | 283 | ProSiteProfiles | BTB domain profile. | 99 | 173 | IPR000210 | GO:0005515 | |
| Stsc30250g00020 | 283 | Gene3D | - | 205 | 273 | - | - | |
| Stsc30250g00020 | 283 | PANTHER | SPECKLE-TYPE POZ PROTEIN | 67 | 267 | - | - | |
| Stsc30250g00020 | 283 | Pfam | BTB/POZ domain | 107 | 202 | IPR000210 | GO:0005515 | |
| Stsc30250g00020 | 283 | SUPERFAMILY | POZ domain | 99 | 201 | IPR011333 | - | |
| Stsc30250g00020 | 283 | Coils | Coil | 56 | 76 | - | - | |
| Stsc30250g00020 | 283 | Gene3D | Potassium Channel Kv1.1; Chain A | 53 | 204 | IPR011333 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30250g00020 | Stsc-Chr30250 | 161900 | 167703 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | TRAF | Stsc30250g00020 | BTB | 2.5e-23 | CL0033 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30250g00020 | K10523 | - | cave:132184304 | 257.684 |