LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30250g00018	ATGGATCCCTACTTTAATCACTACCGTCGCGCAACTACCTACTTTCCTCTTCATCCGCCGTATCACCACCACCACCACCACCTTCTCCGTCAGATTCCGAACCACGCATCCAATTTCAACCCTCCCGTTTTTTTACCTGTCAATCCACTCTTTGTTCCTCAGGTTCCTTTTCTTATCGACCATTATTCGCGTCACCGTAGTCCAATGCCGTCGCAGTATCCTTCAAATTCTAACCCTAGCCGCGGTGCTTCCAGGTTCCGTGAGGAATGCTTTCGCGGAGTAAACCGTCGTCTCCGTGCGGTTGTTCCAACGCATTCCGGTACCGAGTCGAAACTTTGCTCGCAAGAGGATAGGGTGGATACGCACGATTTCGATAGAGTGGATAGGGTTCATGAATCCACTGGCATTCCAAAGAAACAGGTTAAGAGAAAGAGTGCTTTTCTTAGAATCCAGGAGCCAAAACCGAACAATGGTAAGAATGACGACGACGTTGTTGACCCAAAGACTGGTTCTAACTCTTCTAGAGTTGAAGATACGCATTATTTGGGTGATGAAAAGCAATCAGAAGTGGGAGAAGAAAATCCTATTAGGGTTGATGTTTTCTTTGAATCGAATTCTATGGTTGCCAAAGCTAGTGTGAGGCCTTTCAATTCTTCCATTGTTTCTGATCCTGGAGCGACTGCAGTTTCTAATACAGCTTTGAGTCCTACTGGAAAGGCGAAGAAAAAGAAAAAGAAGGCTAACAAAGGGAACGGCCTGGTTTCTGAAATTTCTTGTTCTAAAGCACATAAAATCTCAGAACTACCTGCAAGTGCTGCCCAATCAGATGACACCTCTGGTTCTGGGAAGGAATTGACTGCACAGACGAATGTATCTTTGTTTTCTGAAGTTTCTTGTTTAGGTTCACATCAAGGAGAACTATCTGCCACCGGTTCTGTAAATTCTTGTAGCTCACAGTGTTTGGCAAATGGCACCTCTAGTTCTGGTAAGGACTTGGTTGCACAGGCGAATGCATCTTTGGTTTCTAAAGACGGTTGTTCTGATTCACAGCCAGTAAAACTCTCTGCAGTGAATTCTATGGTTGCAAATTCCATTGTGGTACCTTCAAGTTCTACCCTTGCTTCTAATGCTGTAATAACTGCTGTTTTGAATACAGATTTGAATCCTAATCAGAAAAGGAAAAAGGCTAGAGGAAAGTCTAAAAAAAGAAAGCGTTTGGTTTCTGAAAGTTCTTGTTATGAATCTCAGGGAATAAAACTAACTGAAGGTGCTGCCAATTCAAATAGCTCCCATTGCTTGGCATATGACACCTCTTATTCTGGGAAGGACTTGACTTTCCAGAACAATGTAACTTTGGTTTCTAAGGTTTCTTGTTTGGGTTCACAACAAGAAGAACAATCTGCTGGTTCTGGAAATTCATATAGCTCCCAATGCTTGGCAAATGGCACCTCTAATGCTAGTAAGGACTTGATCACACAAAAGAATGTATGTTTGTTTTCCCAAGATTCTTGCTCAGAATCACAGCATGTGAAACTATCCGAGGTTGCTATGATTTCAAATAGCTCGCAGTGTTTGGTAAAGGACACCTCTAATTCTGGAAAGGATTTGAGTGCACAAAAGAATATATCTGATTACTGTTCTCATCCTCCTAAGGTGGCACAATCCTCTAAGGAGACCGAAACAGTAGAAGTCGTCAATACAGTTTCTGGTAAAACAACTCCAAGGGTTGTTAAGAAGAAAAAGATTGTTAAAAGAGTGGTCAAAAAGGTCGTGAAACCAAATTCAAATAGGTCAAGTTCAATATCAGCAAATATGTTTGATGGAACAGCAAAAGAAGATAATGTTCCTGTTAGTTCATCAACTGTTGCTGCTGCTGCTTCTTCGGACAAGATCCCAACAACTTATGAGGAAAAGAGTGTCACTGTTGACAGCATGTCAGTTCCAGATGATTTTCAGTCTTTACCAAGTGAAGGAAATTTGTTGCTTGAAGACAAAAATGCTGTTCTACATCTTGCAGTCTCAGGGATGCATTCCGCATCCCAAGAACGTGACACATCCAAGTATTCTGATGTGGAAATCAAAAGAGGTGTGAACATTTCAATTTTTCCATCTTGTGCTTCTTTCAAGGAAGATAAAGGGGCTGTTCGTCATTTTTCAGATGCAAATAACTCTCCTCCTGGCTTGTTTAGCATTCCAAATTCTGATAAGCTTACTAAATTACTGAATGGAAGTACTTCCAACATTAATCACATGGATACTTACGATAAGCAATCATGCCAAAATGAAAAGGAGAACTGCAACATACAATCAGTCCCTAATTCTGATATTTCCATTGATTGTGTTAAAGGAGACACAGATATGGTTGACGAGGGCAAGGTTAGAACTTTCTTAAAATTTTCTCCTTCAAAGATGGAGAGCATGTCTCTAGATGCACAAAATCCAGTTGGTCTTGCAAATGTTGTTGACACAACCTCAGGTCTGTTGAAGGATCCTAGTTTTTCAGAAGTCTTAGATATATCTGTTCCAAGGTTAGATTTCAGCTCACAATCCAGAATAGATGGGATCACAACTTCAACTGCAAAAAGGGGGATTTCAGATGCTGAGTTGTATTTTGGAAATAATGGCAATGAGGATGTAAACAAGGTTTCACCCTTGTACAAAAGGAGCAGAACCATGGCTAGTCACTCTAATATTGCAGAGTGTCCGTCTGAACCCAGTGATGCAATTGTGGCTTCTACCACATCTTGTGCAGAAGTCCCTATCCACTATAGTGATATGCAGGTACATAAGGAAGAAGTTGAATTGCTAGGCATGGCTATTATGTCTACTCCATTGCTGACTTATACAGAGGATATTGCTAAAGTGTCTGAAAATAGCTTGGGTAGAGATTCTTTTGAGTCTATGGATTTAAATAGGGAAACAGATTCATCGGTGAGTTTGGAATTGCAGCACTCAGGCATTGCCTCTAGTTCTCTTCTTGAATACTCAGCCACTCCAAATGTTCATTTTCCAAAGTTGGAAGGTGAACAGAAAGAAAATGCCACTTCGTTTGTGCCAGTTAGTACTGAGACAAGCATTTTGGTTGTTGAAAATGTGAAGGGAGAAAATATTAATTTACAGGACACTGGGGAAAATTATCAGAATTCAAAGACTGGACAGAGTAACCTGACTGTGATGGACGTGATGCCAGAATGTCTTGTTCCTAAAACTTCAAAAGACCAGTCTTTCAAATTTTCAAGGTCAAAGCCATTTACTTCTTCAGCCCGTGTATTAAAACCTCGAACCTGGCTTCGAACAGGTAATAAATATCCTGGTTCTTTATCTGGAAGCAAGCCTTCTTTGACAACTAGTCCTCGTAACAAGTTAATTCCACAAATGAAAGCGAACACTCAAAGTACTCTTTATATCCGTAAGGGTAACAGTCTTGTTAGGAAAGTTATCCCTGTTACTGCTTCAACATCGATGTCTGTTGCTAACCAGTCGCCATGTTTGAGCTCTGATAAAGTTCCAGGTCAATCAGGTGCCTTGAAAACTGGAGTAAATGGTGTTCATCTGAAGGGTCACATAATATTTCCACTACCCACTTACACCAAATTGATGAATGCACCATCCCCATTTAGAGCAACTAATGATGCCCCAAACTATTGTGAGGAATTGCTGAAATATTCTGAAACATATATGGGTCCTGACAATGGCGGGGCTGATCAAGTTGAGATTTCTTCTTCAAATGCAAAGAAACTAGTATATATGATGCCCAAGTCGAATAAGTTAGTTGCATCTATGAATTCTAGTGATCTCTCTGTCTCTACTGATGTCAAGACCCAAACAGCATACTCCAGTTGCTACTACAAGAAGAGAAAAAATCAGTTAATAAGGACTTCATTTGTTAGTCATATCAGCCCAACAGTTACAATGCAGGATAGTAATGTAAATTCTGATTGTCCATTGGGTTCTAAAGAGATTTGTAGCAGGTGTACAAAGAAGTGGTCACAGAAAGTTGCTGGGAGTTTGTGCAAACCTTTAAAAGCCCCACTTGTTTGGACCCTTTCATCGAAAGACAACATTGACTCGGGGCATTATGGGAAGATCTTGCCACACTTGTTTCAATGGAAAAGATCAACATTTCGAAGAAGATTTATTCACAATCACGATTTAAGCTCCAATTCTACTCCCTCATCAGCAAACAGCAAGAAATTGCTTCCCTTAGGGAAGAGGGATACTGTTTACACTAGGTCAACCCATGGGTTTTCTCATCAGAAACCCAAGGCATTAGATGCTGGTGGGTCCATTTTAAAAGGGTCCGAGTTCACTGGCAGGCACTCTGAGAAGGTTCGTGAGGAAGCACTTGCTGTTGCTGTATTGGAGAGGAAAACAAGAGAACAGAAAGGCTTGGTTGCCAAAGGAGGTTCTATCCCAAGAAGATTAGTGATTGGAAAAAATGTGTATTTCCAAATTGGCAAAGGTAATCAGCTTATTAGGGACCCAAAGAGACGAACTCGGATTTTGGCTAATGAAAAAGTTAGATGGAGTCTGCACACTGCTAGACAGCGCCTGGCACGAAAGCAGAAGTATTGTCAGTTTTTTACAAGATTTGGGAAATGTAACATGGATGATGGGAAGTGTTCATATATTCATGATCCCTCAAAAGTTGTTGTCTGCACTAAGTTTCTGAATGGTTTATGTTCTAATGGCAACTGCAAATTAACTCATAAGGTTATTCCGGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGTTTATGCACAAACAGAAGTTGTCCTTACAGACATGTCAATGTGAATCCTAAGGCTTCTATTTGTGGAGAATTTCTCAAGGGCTATTGTGCTGACGGAAATGAGTGCCGGAAGAAGCACAGCTATGTTTGTCAGACCTTTGAAGCAATGGGAAACTGCGAAGAAGGAACCAAATGCAAGCTTCATCACCCGAAGAAACAGAGTAAGGGAAAGAAATGGAAGAGGTCTGAAGATGAGAATGTCGGCAGAGGACGTTACTTCGGTTCTATTCCCACTGATATCAAAGAATCTGGGATAATGGTGGCTGAAAGGCAATGGAAACATAGTCATGACAAAGATGGAGATGTTGCTGACTATATCGGCTTCGAAGTGGAAGAAAGTGTTGATCAACCATATGTGCAGGAAACACCATGTAACAATGATATTTGGGACATGCAATTGGAAAATCTTGATGAACTAATTAGACCAGTTCTTACATTGAAAAAGAATTTTATGGTTTAA	5256	0.4066	MDPYFNHYRRATTYFPLHPPYHHHHHHLLRQIPNHASNFNPPVFLPVNPLFVPQVPFLIDHYSRHRSPMPSQYPSNSNPSRGASRFREECFRGVNRRLRAVVPTHSGTESKLCSQEDRVDTHDFDRVDRVHESTGIPKKQVKRKSAFLRIQEPKPNNGKNDDDVVDPKTGSNSSRVEDTHYLGDEKQSEVGEENPIRVDVFFESNSMVAKASVRPFNSSIVSDPGATAVSNTALSPTGKAKKKKKKANKGNGLVSEISCSKAHKISELPASAAQSDDTSGSGKELTAQTNVSLFSEVSCLGSHQGELSATGSVNSCSSQCLANGTSSSGKDLVAQANASLVSKDGCSDSQPVKLSAVNSMVANSIVVPSSSTLASNAVITAVLNTDLNPNQKRKKARGKSKKRKRLVSESSCYESQGIKLTEGAANSNSSHCLAYDTSYSGKDLTFQNNVTLVSKVSCLGSQQEEQSAGSGNSYSSQCLANGTSNASKDLITQKNVCLFSQDSCSESQHVKLSEVAMISNSSQCLVKDTSNSGKDLSAQKNISDYCSHPPKVAQSSKETETVEVVNTVSGKTTPRVVKKKKIVKRVVKKVVKPNSNRSSSISANMFDGTAKEDNVPVSSSTVAAAASSDKIPTTYEEKSVTVDSMSVPDDFQSLPSEGNLLLEDKNAVLHLAVSGMHSASQERDTSKYSDVEIKRGVNISIFPSCASFKEDKGAVRHFSDANNSPPGLFSIPNSDKLTKLLNGSTSNINHMDTYDKQSCQNEKENCNIQSVPNSDISIDCVKGDTDMVDEGKVRTFLKFSPSKMESMSLDAQNPVGLANVVDTTSGLLKDPSFSEVLDISVPRLDFSSQSRIDGITTSTAKRGISDAELYFGNNGNEDVNKVSPLYKRSRTMASHSNIAECPSEPSDAIVASTTSCAEVPIHYSDMQVHKEEVELLGMAIMSTPLLTYTEDIAKVSENSLGRDSFESMDLNRETDSSVSLELQHSGIASSSLLEYSATPNVHFPKLEGEQKENATSFVPVSTETSILVVENVKGENINLQDTGENYQNSKTGQSNLTVMDVMPECLVPKTSKDQSFKFSRSKPFTSSARVLKPRTWLRTGNKYPGSLSGSKPSLTTSPRNKLIPQMKANTQSTLYIRKGNSLVRKVIPVTASTSMSVANQSPCLSSDKVPGQSGALKTGVNGVHLKGHIIFPLPTYTKLMNAPSPFRATNDAPNYCEELLKYSETYMGPDNGGADQVEISSSNAKKLVYMMPKSNKLVASMNSSDLSVSTDVKTQTAYSSCYYKKRKNQLIRTSFVSHISPTVTMQDSNVNSDCPLGSKEICSRCTKKWSQKVAGSLCKPLKAPLVWTLSSKDNIDSGHYGKILPHLFQWKRSTFRRRFIHNHDLSSNSTPSSANSKKLLPLGKRDTVYTRSTHGFSHQKPKALDAGGSILKGSEFTGRHSEKVREEALAVAVLERKTREQKGLVAKGGSIPRRLVIGKNVYFQIGKGNQLIRDPKRRTRILANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNMDDGKCSYIHDPSKVVVCTKFLNGLCSNGNCKLTHKVIPERMPDCSYFLQGLCTNRSCPYRHVNVNPKASICGEFLKGYCADGNECRKKHSYVCQTFEAMGNCEEGTKCKLHHPKKQSKGKKWKRSEDENVGRGRYFGSIPTDIKESGIMVAERQWKHSHDKDGDVADYIGFEVEESVDQPYVQETPCNNDIWDMQLENLDELIRPVLTLKKNFMV	1751

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30250g00018	1751	ProSiteProfiles	Zinc finger C3H1-type profile.	1601	1628	IPR000571	GO:0046872
	Stsc30250g00018	1751	MobiDBLite	consensus disorder prediction	131	168	-	-
	Stsc30250g00018	1751	FunFam	Zinc finger CCCH domain-containing protein 7	1602	1663	-	-
	Stsc30250g00018	1751	PANTHER	CCCH ZINGC FINGER	512	1748	-	-
	Stsc30250g00018	1751	Gene3D	-	1601	1664	-	-
	Stsc30250g00018	1751	ProSiteProfiles	Zinc finger C3H1-type profile.	1519	1548	IPR000571	GO:0046872
	Stsc30250g00018	1751	MobiDBLite	consensus disorder prediction	131	191	-	-
	Stsc30250g00018	1751	SMART	c3hfinal6	1519	1547	IPR000571	GO:0046872
	Stsc30250g00018	1751	SMART	c3hfinal6	1548	1572	IPR000571	GO:0046872
	Stsc30250g00018	1751	SMART	c3hfinal6	1574	1599	IPR000571	GO:0046872
	Stsc30250g00018	1751	SMART	c3hfinal6	1628	1650	IPR000571	GO:0046872
	Stsc30250g00018	1751	SMART	c3hfinal6	1601	1627	IPR000571	GO:0046872
	Stsc30250g00018	1751	MobiDBLite	consensus disorder prediction	389	408	-	-
	Stsc30250g00018	1751	FunFam	zinc finger CCCH domain-containing protein 3	1549	1600	-	-
	Stsc30250g00018	1751	Gene3D	-	1546	1600	-	-
	Stsc30250g00018	1751	MobiDBLite	consensus disorder prediction	217	252	-	-
	Stsc30250g00018	1751	ProSiteProfiles	Zinc finger C3H1-type profile.	1574	1600	IPR000571	GO:0046872
	Stsc30250g00018	1751	MobiDBLite	consensus disorder prediction	217	237	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30250g00018	Stsc-Chr30250	138403	145900	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Stsc30250g00018		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30250g00018	-		-	ahf:114924304	2349.32