Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30250g00017 ATGATGACGTGTCCGGTGCAGGGACGTGGTGGCTCCACTGGCAGGACGGTGGTGGTTGGAGTCAAATTGGATTCTCCGAGCAAGGAGCTTCTCACGTGGGCATTGGTCAAAGTTTCTCAGCCTGCTGATACTGTTGTTGCTCTGCATGTTCTTGATCAACATGAAATTGTGAATAAGGATGGGAAATCGTCTCTGCTTTCTCTTGTTAAGGCCTTTGATCCTGTTCTAGCTGTTTATGAAGGCTTCTGCAATTTGAAACAGGTGGATCTCAAGCTCAAGATTTGCCGTGGTTCATCAGTGAAGAAGATTTTGGTGAGGGAAGCCATTGCTTATTCTGCAACTCATGTTGTTCTTGGAACATGCCATGGCCACCATAAAATCCGGTCATCCACCTCTGTGGCTAAGTACTGTGCCAAGAAGTTGTCCAAGGACTGTTGTGTTCTTGCCATTAACAATGGCAAAGTTGTCTTCAAGCGTGATGGCTTGCCAGCTACTGCCACCACCGACTCACAAGGTCATAGAAATGGTTTGCTTGGTTCAATTCACTGGAAAATCAGCAAGAGTACAAAAGTGCTGAATGATGAGAGTGCAGGGAATGATGCTGGTAAGAGTGCTGGCGAATTTTCGGATCACAGTTTGGCGAAGATTTTAATGGATACTACTGAGTTTGATAGAAAAGATAGCTGCTCGGTTTGTGATACAACTCCGGCATTGTTGCCGCCACCGCCGGAGTCTTCTTGCCACCAATCTTCAGAAGAAGAATCTTGCAGTGATGGTGTTTGTGATAATTCCTTAGCTATAGTGCCCGTTCCGGCTGCAGATACCGCACCACCTGAATTGAAACCAGGCTGGCCGCTACTTCACCAGAGAATCTCATCAGAAACTCAATTTCCCGATAAACTTTCGGCGCGCCAGATCTCTGTGGTCCAATGGGCAATGAGGTTGCCTAGTAGGAATCTTTCATATTCTTCAGATCAAGATCATAAGCCTCAAGATGAATCTGTGGCTTTGGATAGTGAAACTGGTGCTATTGTTCCAGTAGATTTTGGAATAAATAATACCATTTCTTCGCCTGAACCGAACTCAGAAAGTATTCCTCTTGAATTGGCTAGCCTTCCTGAGAAATACTCATCAATTTGCAGATTGTTTGAGTACCAAGAACTTGTATCAGCAACATCGAATTTCTTGCCTGAGAACTTGATTGGGAAAGGAGGAAGCAGTGAGGTTTATAGAGGGTGCCTTCCTGATGGACAGGAACTTGCTGTGAAGATCCTAAAGCCTTCTGATGATGTGTTGAAGGAGTTTCTTCTTGAAATAGAAATCATCACTACCTTGAATCATAAAAACATTATATCTCTTCTTGGATTCTGCTTTGAGAATGGGAATCTTCTTCTTGTCTATGATCTATTATCAAGAGGAAGCCTTGAAGAAAATCTTCATGGGAGTAAGAAGAATTCTCTTGTGTTTGGTTGGAGTGAGAGATATAAGGTTGCGATGGGCGTTGCCGAGGCTTTGGATTATCTGCACTGCAAAAATGATCAGCCCGTGATCCATCGCGACGTGAAATCATCAAATGTATTATTATCTGAGGATTTTGAACCTAAGCTCTCTGATTTTGGACTGGCTAAATGGGCATCAACTTCATCATCACAGATAACTTGCACAGATGTTGCTGGAACCTTTGGCTACTTGGCTCCTGAATACTTCATGTATGGCAAAGTTCATGATAAGATCGACGTCTATGCCTTCGGTGTCGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGAGACTTTCCAAAAGGTCAAGAGAGTCTTATCATGTGGGCAAGCCCACTTCTAGATAGTGGAAAAGTGTTGCAACTGTTAGATCCCACTTTGGGTGATAACTATGATCATGATGAGATGGAAAGAATGGTCTTAGCAGCCACACTTTGTATAAGGCGTGCTCCAAGAGCTAGGCCTCAAATGAGCCTTATTTCTAAGCTCCTTCATGGTGATGCTGATGTGATCAAGTGGGCAAGGTTGGAAATTAATGCCAGGGAAGCACCGGAATTGCTTGAAGATGAAGCTTGTCCACCAAGCAACCTGCAGTCACATCTTAACCTTGCACTCCTTGATGTGGAGGATGATTTGCTCTCCATGTGCAGTGTCGAGCAGCACGTGTCGTTGGAGGACTACCTGAGAGGCCGGTGGAGCCGCTCCTCGAGCTTTGACTGA 2226 0.4474 MMTCPVQGRGGSTGRTVVVGVKLDSPSKELLTWALVKVSQPADTVVALHVLDQHEIVNKDGKSSLLSLVKAFDPVLAVYEGFCNLKQVDLKLKICRGSSVKKILVREAIAYSATHVVLGTCHGHHKIRSSTSVAKYCAKKLSKDCCVLAINNGKVVFKRDGLPATATTDSQGHRNGLLGSIHWKISKSTKVLNDESAGNDAGKSAGEFSDHSLAKILMDTTEFDRKDSCSVCDTTPALLPPPPESSCHQSSEEESCSDGVCDNSLAIVPVPAADTAPPELKPGWPLLHQRISSETQFPDKLSARQISVVQWAMRLPSRNLSYSSDQDHKPQDESVALDSETGAIVPVDFGINNTISSPEPNSESIPLELASLPEKYSSICRLFEYQELVSATSNFLPENLIGKGGSSEVYRGCLPDGQELAVKILKPSDDVLKEFLLEIEIITTLNHKNIISLLGFCFENGNLLLVYDLLSRGSLEENLHGSKKNSLVFGWSERYKVAMGVAEALDYLHCKNDQPVIHRDVKSSNVLLSEDFEPKLSDFGLAKWASTSSSQITCTDVAGTFGYLAPEYFMYGKVHDKIDVYAFGVVLLELLSGRKPISGDFPKGQESLIMWASPLLDSGKVLQLLDPTLGDNYDHDEMERMVLAATLCIRRAPRARPQMSLISKLLHGDADVIKWARLEINAREAPELLEDEACPPSNLQSHLNLALLDVEDDLLSMCSVEQHVSLEDYLRGRWSRSSSFD 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30250g00017 741 SUPERFAMILY Protein kinase-like (PK-like) 376 664 IPR011009 -
Stsc30250g00017 741 CDD STKc_IRAK 401 660 - -
Stsc30250g00017 741 Gene3D Transferase(Phosphotransferase) domain 1 470 677 - -
Stsc30250g00017 741 Pfam Protein kinase domain 399 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30250g00017 741 ProSiteProfiles Protein kinase domain profile. 395 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30250g00017 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Stsc30250g00017 741 PANTHER OS08G0249100 PROTEIN 76 677 IPR046958 -
Stsc30250g00017 741 CDD USP_Like 16 150 - -
Stsc30250g00017 741 Gene3D HUPs 14 152 IPR014729 -
Stsc30250g00017 741 Pfam Universal stress protein family 15 147 IPR006016 -
Stsc30250g00017 741 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Stsc30250g00017 741 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 364 469 - -
Stsc30250g00017 741 FunFam Putative receptor-like serine/threonine-protein kinase 470 682 - -
Stsc30250g00017 741 SMART serkin_6 395 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30250g00017 741 Gene3D Phosphorylase Kinase; domain 1 367 469 - -
Stsc30250g00017 741 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 149 - -
Stsc30250g00017 741 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 14 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30250g00017 Stsc-Chr30250 133278 137347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30250g00017 382 662 Trihelix Transcription Factor Family AT1G68690 45.804 7.71e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc30250g00017 Pkinase 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30250g00017 - - pcin:129303222 1003.43