Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30250g00013 | ATGGGGAGGGGTAAGATTGAGATAAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACTTATTCAAAGAGGAAGAATGGGATCTTAAAGAAAGCTAAGGAAATCAGTGTTCTTTGTGATGCTCAAGTTTCTCTCATCATCTTTGGTGCTTCTGGCAAGATGCATGAATACATCACCCCCTCCACCACGTTGATTGACATCCTAGACAGATACCAAAGAGCTTCTGGGAAGACTCTATGGGATGCTAAACATGAGAACCTGAGCAATGAAATTGATAGAATCAAGAAAGAGAATGACAGCATGCAAATTCAGCTCAGGCACTTGAAGGGAGAAGACATTACCTCACTGACTTACAAAGAGCTCATGGCCCTAGAAAATGCCCTTGATAAGGGCCTCAATGGAATCCGTGAAAAAAAGGGCAAGATTTTGGAGGAGGAAAACAAGGAACTCAATTTCCTTCTGCAACAGCATATGGCACTGGAAGGAGCAAGAAACATGCATGGACAATGGATTTAA | 516 | 0.4244 | MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYITPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIQLRHLKGEDITSLTYKELMALENALDKGLNGIREKKGKILEEENKELNFLLQQHMALEGARNMHGQWI | 171 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30250g00013 | 171 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc30250g00013 | 171 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 152 | - | - | |
Stsc30250g00013 | 171 | Coils | Coil | 143 | 163 | - | - | |
Stsc30250g00013 | 171 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977|GO:0045944 | |
Stsc30250g00013 | 171 | Gene3D | - | 13 | 102 | IPR036879 | GO:0003677|GO:0046983 | |
Stsc30250g00013 | 171 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc30250g00013 | 171 | ProSiteProfiles | K-box domain profile. | 84 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Stsc30250g00013 | 171 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc30250g00013 | 171 | SUPERFAMILY | SRF-like | 2 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Stsc30250g00013 | 171 | Pfam | K-box region | 81 | 151 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Stsc30250g00013 | 171 | Coils | Coil | 77 | 111 | - | - | |
Stsc30250g00013 | 171 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc30250g00013 | 171 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc30250g00013 | 171 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc30250g00013 | 171 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30250g00013 | Stsc-Chr30250 | 70427 | 73067 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30250g00013 | 1 | 137 | MADS-box Gene Family | AT5G20240 | 69.343 | 1.02e-67 | 201 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Stsc30250g00013 | K-box | 1.5e-18 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30250g00013 | K09264 | - | gmx:100795861 | 290.426 |