Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30250g00013 ATGGGGAGGGGTAAGATTGAGATAAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACTTATTCAAAGAGGAAGAATGGGATCTTAAAGAAAGCTAAGGAAATCAGTGTTCTTTGTGATGCTCAAGTTTCTCTCATCATCTTTGGTGCTTCTGGCAAGATGCATGAATACATCACCCCCTCCACCACGTTGATTGACATCCTAGACAGATACCAAAGAGCTTCTGGGAAGACTCTATGGGATGCTAAACATGAGAACCTGAGCAATGAAATTGATAGAATCAAGAAAGAGAATGACAGCATGCAAATTCAGCTCAGGCACTTGAAGGGAGAAGACATTACCTCACTGACTTACAAAGAGCTCATGGCCCTAGAAAATGCCCTTGATAAGGGCCTCAATGGAATCCGTGAAAAAAAGGGCAAGATTTTGGAGGAGGAAAACAAGGAACTCAATTTCCTTCTGCAACAGCATATGGCACTGGAAGGAGCAAGAAACATGCATGGACAATGGATTTAA 516 0.4244 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYITPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIQLRHLKGEDITSLTYKELMALENALDKGLNGIREKKGKILEEENKELNFLLQQHMALEGARNMHGQWI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30250g00013 171 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc30250g00013 171 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Stsc30250g00013 171 Coils Coil 143 163 - -
Stsc30250g00013 171 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Stsc30250g00013 171 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Stsc30250g00013 171 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc30250g00013 171 ProSiteProfiles K-box domain profile. 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30250g00013 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc30250g00013 171 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Stsc30250g00013 171 Pfam K-box region 81 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30250g00013 171 Coils Coil 77 111 - -
Stsc30250g00013 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc30250g00013 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc30250g00013 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc30250g00013 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30250g00013 Stsc-Chr30250 70427 73067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30250g00013 1 137 MADS-box Gene Family AT5G20240 69.343 1.02e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc30250g00013 K-box 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30250g00013 K09264 - gmx:100795861 290.426