Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30249g00012 ATGTCAGATATTCTCTCTATTGGAGATATTCTAGACAGAAAGCTTAAGCGCAAATTGGAGGAGCCACTTATCATGGATGATGATCCAGAGCTAGTGCTTACTCTAAGCCTCAATAGTGAAAGGCCCAAACCATCTTCCAACAATTTCACATCTAAATCCCAAAAGCATGTGGAAAATTCGGAGCAAGAACGCTTGTTCCCTTGCAAATTCTGTTACAAGAAGTTTGCAAGTTCTCAAGCCTTAGGAGGACATCAAAACGCTCACAAGCATGAGAGGATACTCTCAAAAATGAACAAAGTGTTTACCATGAGAACGAAAGCTCTCGATTCTCATCATCCTTGGCCATACTCAACCATGGCAAATCATCTACCCCTTGAAGATGCACACATGCACCATATGGCTCATATGCCTTCCACCATGACTATGCCTATGCCTACTGCTTATTTTGATTGGATCTAA 459 0.4161 MSDILSIGDILDRKLKRKLEEPLIMDDDPELVLTLSLNSERPKPSSNNFTSKSQKHVENSEQERLFPCKFCYKKFASSQALGGHQNAHKHERILSKMNKVFTMRTKALDSHHPWPYSTMANHLPLEDAHMHHMAHMPSTMTMPMPTAYFDWI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30249g00012 152 Gene3D Classic Zinc Finger 40 121 - -
Stsc30249g00012 152 MobiDBLite consensus disorder prediction 37 58 - -
Stsc30249g00012 152 Pfam C2H2-type zinc finger 66 90 - -
Stsc30249g00012 152 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 28 142 IPR044246 GO:0009788
Stsc30249g00012 152 MobiDBLite consensus disorder prediction 38 55 - -
Stsc30249g00012 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Stsc30249g00012 152 SUPERFAMILY beta-beta-alpha zinc fingers 62 93 IPR036236 -
Stsc30249g00012 152 ProSitePatterns Zinc finger C2H2 type domain signature. 68 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30249g00012 Stsc-Chr30249 109417 109875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30249g00012 61 117 C2H2 Transcription Factor Family AT5G57520 52.632 1.76e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30249g00012 - - adu:107458588 134.42