Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30249g00004 ATGAAGAAGGTAGAAGTGGAAGTCACCTCCAAAGAAATGATAAAACCTTCTTCTCCAACTCCAAACCACCTTCGATGTTATCAACTCTCTTTTCTTGATCAAATCTCTCCCATGGTCTACAATCCCACCGTTCTCTTCTATTCTTTCCACCAAATCAATGCATCCACCACCACCACCATCTCCAACCACCTCAAGAAATCTCTCTCCCTTGCCCTAACACATTTCTACCCTCTTGCCGGCCGGATTGACGGTGGCAAGGGCTTCGTCGACTGTATCGATGAGGGTGTACCGTTCATAGAAACAAAAGTGAAGAATTGCAAGCTTGCTGAAGTTGTTCATAATCCAATTCCTGGAGAACTGAACCATCTAGTTCCATTCAAACTGAACAACATAACCAACATCATATTCGGAGTTCAGCTCAACGTTTTCCAGTGCGGCGGCGTCGCAATCGGCGCGTGTCTTTCACACCAAATCGCCGACGCTTTATCGTTCTTCAAGTTCCTCAATTCTTGGTCTTCCATTGCTGCCAAAAATGGAAACTTACCAAATCCACAGTTTCTTTCATCAAAGCTTTTCCCTCCGATAAACACCTCCGGCTTCGATCCGAGAAGCGGCATAACGACGGAGAATGTGGTGTGCAAGTTGTTCGTGTTCGATTCAAGCGTTGTTGAAACCCTAAGGGACAATTGCGCAATAGAAAACCATGGTGATAATGGTGAAGAGAAAAGACCAACTCGTGTTGAGGCTTTATCTGCATTCATTTGGAGCCGTTATGTGGCGGTTACGCGAGATCACAAAGGTTGTTATGGAAACAAGAAGAGGAGAATGCATGTTGTGGTTCATGCTGTGAATCTAAGGCCAAAGATGGAACCACCATTGCCAGATGATTCGTTTGGGAACTACTATCGAATCTCCATGACGATTCCATCTTTGGACCACGAAGAAAAGTGTTACGGATTTGTGAAACAGGTGAGGGATCAAATAAAGAAGATTGATAAAGAATACATTAGAAAACTTCAAGAGGGAAAAGAGCATTTGAATTTCCTTAAGGATAGTTCAGAAAGGGTTCTTGTGAAGGGAGAATTGGTTTCGTTCAGCTTCACGAGTCTATGTAGGTTTCCTCTCTATGATGTTGATTTTGGTTGGGGCAAACCAACATGGGTAGGCTCACCTGCTTTAACTTTTAAGAATCTTGTTGTGTTTTGTGACACTAAGATTGGTGGTGCCATTGAAGCCTATGTTAGCTTGAGCATGGAAGACATGGCAAAATTTGAAGCAGATAAGGACTTGCTTGCTTTTGTCAACAACAATAATAACAAGCCATATATAGATAGATTATCTTAA 1344 0.4271 MKKVEVEVTSKEMIKPSSPTPNHLRCYQLSFLDQISPMVYNPTVLFYSFHQINASTTTTISNHLKKSLSLALTHFYPLAGRIDGGKGFVDCIDEGVPFIETKVKNCKLAEVVHNPIPGELNHLVPFKLNNITNIIFGVQLNVFQCGGVAIGACLSHQIADALSFFKFLNSWSSIAAKNGNLPNPQFLSSKLFPPINTSGFDPRSGITTENVVCKLFVFDSSVVETLRDNCAIENHGDNGEEKRPTRVEALSAFIWSRYVAVTRDHKGCYGNKKRRMHVVVHAVNLRPKMEPPLPDDSFGNYYRISMTIPSLDHEEKCYGFVKQVRDQIKKIDKEYIRKLQEGKEHLNFLKDSSERVLVKGELVSFSFTSLCRFPLYDVDFGWGKPTWVGSPALTFKNLVVFCDTKIGGAIEAYVSLSMEDMAKFEADKDLLAFVNNNNNKPYIDRLS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30249g00004 447 Coils Coil 321 341 - -
Stsc30249g00004 447 Gene3D - 3 199 IPR023213 -
Stsc30249g00004 447 Gene3D - 208 434 IPR023213 -
Stsc30249g00004 447 PANTHER F21J9.9 7 434 - -
Stsc30249g00004 447 Pfam Transferase family 5 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30249g00004 Stsc-Chr30249 21932 26416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30249g00004 4 425 Monolignol Biosynthesis Gene Families AT5G48930 23.414 4.87e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30249g00004 K13065 - gmx:102670206 602.438