Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30248g00022 ATGTCTTATCAATCGCCCGAAAGAATCCCCGATCCATCATGGAAGTACGATGTGTTTTTGAGTTTCCGAGGCTCAGATACTCGCTACGGATTCATTTCACATCTCTATCAAGCTTTCAACAGAGCTTGTATTGATGCTTTCATTGACGATTGGCAGCTTCTGAGTGGAAACCAGAACACAGACACAGTGATTCAAGCAATCGAAGCTTCTAGAGTTTCTGTTGTTGTTTTCTCAGCAAATTATGCTTCTTCAATATGGTGCCTGGACGAGCTGACAAAAATAATGGAGTGTCAAAGGACCAAAGGTCAGACTGTGATTCCGGTGTTTTACGATGTTGATCCCACAGATGTACGCCATCAGAGAGGTGCCTTTAAGGAAGCTTTTCAACGTTATGAGGAAAGATTCTCACATGACTCACATTTGAGTGAGAAAATCCACACATGGAGAGCAGCCCTGACCGAAGCCGCTAGCATAAGGGGAGTTTACCTAAGCAGAAAAAGAAATGAAGCTGATGCTATCAGAGAGATTGTTGAACATTTAAATACTCTACTAGAATCAGAAAATTTGTTTATCACAGAACATCCAGTGGGAGTACAATCTCGCATTAAAGACGTGATTCAACAATTAAATGATCATAAACCAGATGATGTGGTGCTAATGGGGATATGGGGGATGGGAGGAGTGGGTAAAACAACCATTGCCACAGCTGTATATAATCAAATTCGTCACGATTTTGATAGTCGAAAGTTCCTCCCAAACATTAGGGAGATGTGGGAGAATAACCAACAGGTTTTTCTGCAAGAACAACTATTGAATGGTATTTGCAAAGCAGAGATACACATACAAAACATCAAATCAGGGGTAGCTCAATTAAAGAAGAGACTTCGCTTAAAAAGGATATTCATTGTACTTGATGATGTAGATAATGTAAATCAGCTGGAAGCCTTGTGTGGAGGTCGAGAATGGTTTGGCCCTGGGAGTATAATAATCATCACAACAAGAGATAGACGTCTGCTGCGTAAGATTGGAGTTGATCACGTCTACCAAGTGAAAGAAATGGATTACAATGAATCCCTTGAACTTTTTTGTTGGAATGCATTTAACCAAGCAACTCTATTAGAAAAGTTTGCTAAACTTACAGAAGATGTAGTTGCATATTGTGGGGGATTGCCATTAGCCCTTGCAACAATTGGACGTGAATTGTCTGGAAAGATGAAAATAGATGAGTGGGAGAATGTATTAGGTGGACTCAAAAGGCGTTCCCATCCGGACGTACACAAAGTCTTGAAAATAAGCTATGATGGCTTAAATGATGACACACAGAAAGAAATATTTCTTGATATTGCTAGCTTTTATATTGGCAAGGAAAGAGGGGAGGTACTGGAAGAATTATATAATTCCTTTGGACTTATTAGCGAAGATGGAAATATTTTCCTCGAAGAGCAGAGTCTGATAACATTTGATGAGGAAGACAGAATTCAAATTCATCCTTTGATGCGACAGATGGCAACAGAAATAATGGTTCGACATCCGTCAAAAACTGATGAGCCTCAGTCCATGTCTTACCAATCAGAAGAAAGAACCCCCGATCCATCATGGAAGTACGATGTGTTTTTGAGTTTCCAAGGCCTAGACACTCGCGACAAATTCATCAAACATCTCCATCAGGCTTTAAAGATGGCTGGGATTCATGCTTTCATTGAAGAAGATGAGAAGCTTCGGATTGGAGACGAGATCTCGTATACAATGTTTCAAGCAATCGAAGCTTCTAGAGTTTCTATTATTGTTTTCTCTCCAAATTATGCTGCTTCTAAGTGGTGTCTGGACGAGCTGACGAAAATAATGGAGTGTGTAAGGACCATAGGTCAGGCTGTCATTCCAGTGTTCTACAATGTTGATCCCGCAGGTATACGCCACCCGAGAGGTTCTTATGGAGAAGCTTTTCAACTTCATCTGAAAAGATCCTCACATGAGAGAGTCCATGCATGGAGGGCAGCGCTGATTGAATCTGCTAAGCTTCACGGAGGATTTGACACCAGGGGAGACAGGAACGAAGCTGAAATTACCGGAAATATTGTTGAGCATGTAACTGAGCTGCTAGTTTCGAAAGGCATGTTCATCACAAGTCATCCAGTGGTAGGACAATCTCGCAAGGAACATGTGATTCGACTATTACATTCTCGTACACCATCAGATGTCATGTTAATGGGGATATGGGGGATGGCGGGAGTGGGTAAAACAACCCTTGCCAAAGTTGTTTATGATGAAATTCGTCAGAGTTTTGATAGACCAATGTTCCTCCCAAACATTAGGGAGATGTGGGAGAATAACCAACAGGTTTTTCTGCAAGAACAACTGTTGAACTTCATTTGCAATGCAGGCATACAGATACAAAACATCGCATCAGGGGTAGCTAAATTAAAGGAAAAACTTTGCCAAGAAAAGGTACTTATAGTACTTGATGATGTAAGTAATATAGATCAGTTGAATGCCTTGTGCGGAAGTCGAGAATGGTTTGGTCCTGGGAGCGTAATAATCATCACAACAAGAGATAGACGTCTGCTTCGTGAGATTCGAGTTGACCGCGTATATCAAGTGACAGAATTGGATTCCGAAGAATCTCTTGAACTTTTTCGTCGGAATGCATTTAGTCAAGCAACTCCTTTAGAAGAGTTTGATAGAGTTGAGAGAGAGGTAGTTGCATATTGTGGGGGATTGCCATTAGCTCTTGTAACAATCGGTCGTGAATTGTTTGGAAAGTTGATAAATGAGTGGGAGAATGTATTAGGTGGGCTCAAAACTCGTCCCCATGCGGATGTAAACAAAGTAAGCTATGATGGCTTAAATGATGACATAGATAAAGAAATATTTCTTGATATAGCTAGCTTTTGTATTGGCATGAAAAGAGAGGAAGTACTGCAAACACTAGAGCATGCCTTTGGAATTCCCGTAGCTGGAATTAGTTTCCTTGAAGAGCAGAGTCTTATAACAATTGATCATCTAGATAAAGTTCGAATACATCATTTGTTGCGAGACATGGGAAGAGAAATCGTTCGAGAGCTATCACAAACTCAGGCTCAGGAAAGGAAGTACGATGTTTTTGTGAGTTTTCGAGGTGGGGACACTCGTTTAGGATTTACATCACATCTCCATGAATATCTCCGAAATGCTCCATCAAGAATTACTGTTTTCAAGGATGATGATGATATTGATGGACTTAAAAGGGGAGAAAGGATTTCAATGGCATTGTTAAAAGCAATAGGATTGTCTGCATGCTCTGTTATTGTGTTGTCAACCAACTATGCTGATTCAAAATGGTGCCTGCAAGAGCTTGAGAATATCATGGTATGCCATAGAACAAAAGGTCAATTGGTTTTCCCAATATTCTATGGAGTAGATCCCGCAGATGTACGCTATCAAAGGAAAGAGAGTGAGTTTGGGAAAGCTTTTGCAAGTCTTATCAATGGTAAAAGACCAGTGGAAGCAGATAAGGTGCAAAGATGGAAAGCAGATCTTTTTCAAGTTAGTAACTTTTCGGGGATGAATATGATAAACTCCAGGAATGAAAGTGAAGATATCAAAAAAATTGTTGAAGACGTTGCTCGCTTACTAAAAAAGACAGAGATGCCCATTCCTAGTCATCCAGTGGGAGTAGCATCTCGTGTGCAAAAGGTGATTGAAGAATCAAACATTCAACGACAAACAAAAGCTGTTCTGATACTGGGGGTAAAGGGCATGGGGGGCATTGGTAAAACAACTATTGCCAAAGTCATCTATAATCAAATTGGTCGTGATTTTCAAGCCAGGAGCTTCCTCCAAGACATTAGAGAACGTTGGCAGGAAGAAAATGGAAAGGTTGGCTTGCAACAGCAACTTCTTGAGGATATATTGGGAGCAACAAGGATACATATAAGTAACACTGGTTCAGGGAAGAAAACATTAGAGGATAAGCTTAGAGGTAAAAGGGTACTCATTGTGCTTGACGATGTGGATGATTCGGACCAACTCAATGATTTGTGTGGTAGTGGTGAATGGTGTGGTCCTGAAAGCAAAGTAATCATCACAACAAGAAATAATGATCTTCTTCGAGTGTGTGGCGATGACCAAATATTGGAAATACCAAGCTTGGATGCTGATGAATCCCTGGAGCTTTTTAGCTGGCATGCATTCAAACAAGCATATCCAAAAGAAAAGTTTGACGCCTTATCTAAACAAGCTGTTGAATATTGTAATGGATTGCCATTAGCTCTGGAACTTCTTGGGTCCCATTTGTTTGGTAGAGACATGGAATATTGGCAACTAAAATTAGATACTCTGAAATCAATTCCCCATGATAAAGTCAACAAGATACTACGAATAAGTTTTGATGGTTTAAGTAATCATCATAGTGAAAAAGAAATATTCCTTCACATCGTGTGCTTTTTCATTGGGATGGATCAAAATGAAGTTATCCCAATATTAACAAGTTGCGGGTTCCTTGCTGCAGAAATGGGAATCAATGTCCTGAATGTGCAGAACCTTATAACTGTTGATAAGAATAATATGCTTGGAATGCATGAATTGTTAAGAGATATGGGAAGAGCAATAATTCGTGAGCAATCACCTGAACTTGAAGAGCGCAGTACATTATGGTACGAAGAAACAGTGCTTCAACTATTAAGGATTCGTGAGGAGGGAACAGATTTGGAAAAGGTTAAAGGATTGAGTTTGAAGTTGCCAACGACCATTTCGTTTAGTTTGAGTGAAAAAACATTAAAGATTATGCCTGGACTCAAATTGCTTCAACTGGCCAGTGTAGAATTTTATGGAGAGTTCAAACATCTTTCTAGAAATCTTAGATGGATGAGTTGGAACGGATTTCCTTTGACACACACTCCCATGGACTGCTATCAACCATGTACAGTTTCGATTGAGTTAGAAAACAGCAAACTCCAAGTTCTATGGCGGGAGAGGCCGAAGCAGCCAATGAACTATCTGAAGATTTTAAATCTTAGCCATTCTCATAACTTGATAAGAAGCCCAGATTTTTCATGGTTACCTAATCTTGAGAAGTTAGTACTCAAAGATTGTATAAAGTTGTCTTCGATTTCCGATAGCATTGGAACTCTTGAAAAAATCCGTTGGATCAATTTGGAAGGTTGTACAAACCTTTTTGAACTTCCAAGAAGCATATACAAGTTGAAATTTCTTGAAACCTTCATCCTCTCTGGTTGTTCAAAGATTGTCAATTTAGAAAAAGATGTGGAACAAATGAAATCTTTGAAAGTGCTAAAAGCTGATAAAACTGGCATAGTAGAAGTGCCCAAAGCTCTAGAAAGATTAAGAAACCTAGTATATATTTCTGTGGCTGGCTATGAAGGAAAGGCATCTGATGTGATTCCATTAATCATGCCTTGGTCGTCATCGACAATTAATGAAGAAGAAACGGAGAACCTCCACGTCAGAGGAGATAGGGATGCTATTGATTTGCCAGCTAACAATAAATTTCGTGGACCCTTGGCTCTGGCTTCCGTTCTGGTCTCGCCGCCGTTCTGGATTGGTGTTGCTGGTTTTCTAATTTGGAAACATCGCCGATCTGACAGACGAAGAAGCTAA 5595 0.3998 MSYQSPERIPDPSWKYDVFLSFRGSDTRYGFISHLYQAFNRACIDAFIDDWQLLSGNQNTDTVIQAIEASRVSVVVFSANYASSIWCLDELTKIMECQRTKGQTVIPVFYDVDPTDVRHQRGAFKEAFQRYEERFSHDSHLSEKIHTWRAALTEAASIRGVYLSRKRNEADAIREIVEHLNTLLESENLFITEHPVGVQSRIKDVIQQLNDHKPDDVVLMGIWGMGGVGKTTIATAVYNQIRHDFDSRKFLPNIREMWENNQQVFLQEQLLNGICKAEIHIQNIKSGVAQLKKRLRLKRIFIVLDDVDNVNQLEALCGGREWFGPGSIIIITTRDRRLLRKIGVDHVYQVKEMDYNESLELFCWNAFNQATLLEKFAKLTEDVVAYCGGLPLALATIGRELSGKMKIDEWENVLGGLKRRSHPDVHKVLKISYDGLNDDTQKEIFLDIASFYIGKERGEVLEELYNSFGLISEDGNIFLEEQSLITFDEEDRIQIHPLMRQMATEIMVRHPSKTDEPQSMSYQSEERTPDPSWKYDVFLSFQGLDTRDKFIKHLHQALKMAGIHAFIEEDEKLRIGDEISYTMFQAIEASRVSIIVFSPNYAASKWCLDELTKIMECVRTIGQAVIPVFYNVDPAGIRHPRGSYGEAFQLHLKRSSHERVHAWRAALIESAKLHGGFDTRGDRNEAEITGNIVEHVTELLVSKGMFITSHPVVGQSRKEHVIRLLHSRTPSDVMLMGIWGMAGVGKTTLAKVVYDEIRQSFDRPMFLPNIREMWENNQQVFLQEQLLNFICNAGIQIQNIASGVAKLKEKLCQEKVLIVLDDVSNIDQLNALCGSREWFGPGSVIIITTRDRRLLREIRVDRVYQVTELDSEESLELFRRNAFSQATPLEEFDRVEREVVAYCGGLPLALVTIGRELFGKLINEWENVLGGLKTRPHADVNKVSYDGLNDDIDKEIFLDIASFCIGMKREEVLQTLEHAFGIPVAGISFLEEQSLITIDHLDKVRIHHLLRDMGREIVRELSQTQAQERKYDVFVSFRGGDTRLGFTSHLHEYLRNAPSRITVFKDDDDIDGLKRGERISMALLKAIGLSACSVIVLSTNYADSKWCLQELENIMVCHRTKGQLVFPIFYGVDPADVRYQRKESEFGKAFASLINGKRPVEADKVQRWKADLFQVSNFSGMNMINSRNESEDIKKIVEDVARLLKKTEMPIPSHPVGVASRVQKVIEESNIQRQTKAVLILGVKGMGGIGKTTIAKVIYNQIGRDFQARSFLQDIRERWQEENGKVGLQQQLLEDILGATRIHISNTGSGKKTLEDKLRGKRVLIVLDDVDDSDQLNDLCGSGEWCGPESKVIITTRNNDLLRVCGDDQILEIPSLDADESLELFSWHAFKQAYPKEKFDALSKQAVEYCNGLPLALELLGSHLFGRDMEYWQLKLDTLKSIPHDKVNKILRISFDGLSNHHSEKEIFLHIVCFFIGMDQNEVIPILTSCGFLAAEMGINVLNVQNLITVDKNNMLGMHELLRDMGRAIIREQSPELEERSTLWYEETVLQLLRIREEGTDLEKVKGLSLKLPTTISFSLSEKTLKIMPGLKLLQLASVEFYGEFKHLSRNLRWMSWNGFPLTHTPMDCYQPCTVSIELENSKLQVLWRERPKQPMNYLKILNLSHSHNLIRSPDFSWLPNLEKLVLKDCIKLSSISDSIGTLEKIRWINLEGCTNLFELPRSIYKLKFLETFILSGCSKIVNLEKDVEQMKSLKVLKADKTGIVEVPKALERLRNLVYISVAGYEGKASDVIPLIMPWSSSTINEEETENLHVRGDRDAIDLPANNKFRGPLALASVLVSPPFWIGVAGFLIWKHRRSDRRRS 1864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30248g00022 1864 FunFam Disease resistance protein (TIR-NBS-LRR class) 531 702 - -
Stsc30248g00022 1864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 960 IPR027417 -
Stsc30248g00022 1864 FunFam Disease resistance protein (TIR-NBS-LRR class) 1027 1206 - -
Stsc30248g00022 1864 SUPERFAMILY Toll/Interleukin receptor TIR domain 1023 1180 IPR035897 -
Stsc30248g00022 1864 Gene3D - 1028 1201 IPR035897 -
Stsc30248g00022 1864 Gene3D - 531 698 IPR035897 -
Stsc30248g00022 1864 Gene3D - 699 863 IPR027417 -
Stsc30248g00022 1864 Gene3D - 1202 1371 IPR027417 -
Stsc30248g00022 1864 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 186 - -
Stsc30248g00022 1864 SUPERFAMILY Toll/Interleukin receptor TIR domain 526 673 IPR035897 -
Stsc30248g00022 1864 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 160 IPR035897 -
Stsc30248g00022 1864 SUPERFAMILY L domain-like 1570 1788 - -
Stsc30248g00022 1864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1204 1470 IPR027417 -
Stsc30248g00022 1864 PRINTS Disease resistance protein signature 1317 1331 - -
Stsc30248g00022 1864 PRINTS Disease resistance protein signature 1240 1255 - -
Stsc30248g00022 1864 PRINTS Disease resistance protein signature 1410 1424 - -
Stsc30248g00022 1864 PRINTS Disease resistance protein signature 1654 1670 - -
Stsc30248g00022 1864 Gene3D - 187 349 IPR027417 -
Stsc30248g00022 1864 SMART till_3 15 158 IPR000157 GO:0007165
Stsc30248g00022 1864 SMART till_3 1030 1178 IPR000157 GO:0007165
Stsc30248g00022 1864 SMART till_3 534 673 IPR000157 GO:0007165
Stsc30248g00022 1864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 448 IPR027417 -
Stsc30248g00022 1864 ProSiteProfiles TIR domain profile. 533 700 IPR000157 GO:0007165
Stsc30248g00022 1864 Pfam NB-ARC domain 200 433 IPR002182 GO:0043531
Stsc30248g00022 1864 Pfam NB-ARC domain 717 946 IPR002182 GO:0043531
Stsc30248g00022 1864 Pfam NB-ARC domain 1235 1444 IPR002182 GO:0043531
Stsc30248g00022 1864 SUPERFAMILY "Winged helix" DNA-binding domain 1445 1553 IPR036390 -
Stsc30248g00022 1864 Gene3D - 11 186 IPR035897 -
Stsc30248g00022 1864 Pfam TIR domain 15 183 IPR000157 GO:0007165
Stsc30248g00022 1864 Pfam TIR domain 534 696 IPR000157 GO:0007165
Stsc30248g00022 1864 Pfam TIR domain 1030 1207 IPR000157 GO:0007165
Stsc30248g00022 1864 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1031 1780 IPR044974 GO:0006952
Stsc30248g00022 1864 SUPERFAMILY "Winged helix" DNA-binding domain 939 1023 IPR036390 -
Stsc30248g00022 1864 Gene3D - 1375 1459 IPR042197 -
Stsc30248g00022 1864 Gene3D - 353 437 IPR042197 -
Stsc30248g00022 1864 Gene3D - 868 949 IPR042197 -
Stsc30248g00022 1864 ProSiteProfiles TIR domain profile. 1029 1204 IPR000157 GO:0007165
Stsc30248g00022 1864 Gene3D Ribonuclease Inhibitor 1540 1795 IPR032675 -
Stsc30248g00022 1864 SMART AAA_5 732 870 IPR003593 GO:0016887
Stsc30248g00022 1864 SMART AAA_5 216 354 IPR003593 GO:0016887
Stsc30248g00022 1864 SMART AAA_5 1237 1376 IPR003593 GO:0016887
Stsc30248g00022 1864 ProSiteProfiles TIR domain profile. 14 184 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30248g00022 Stsc-Chr30248 149356 164712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30248g00022 196 527 WRKY Transcription Factor Family AT5G45050 33.628 3.04e-45 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30248g00022 - - aip:107625711 1620.91