Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30248g00020 ATGGGGGAAAGCTATACAGAACTTGCAGTGGGAATCAACCTTGGTACAACTTACTCGCGTGTTGCAGTTTGGAGGCGACGCAATTCTCAAGTGGAAATCCTAACCAACAAGCACAACAATTCTAAAACTCCTTCTGTTGTTGGTTTCACCGACAAAGATGTTTTCATTGGTGAATCTGCTCTCAATCAGGCTACTACCAACGCAAAGAACACCATCTTTGCTGATCGCAACGACAAACCTCAGTTTGTTATGAGGTGCAAGTTGTTTTCTGCTGAGGATATCATGTACATGATTCTCAAAGATATCTGGAATCACTTGAGGAGGAAGGAGAAAAAAGCAGTAATTACTGTGCCTGCTTGCTTCGATGGTTCCCGGCGTGAAGCCATAAAAAATGCGTGTAAGAAAGCCGGCTTAGAGATTTTGGAGATAATCGATGAACCCGTTGCTGCAGCTATTGCCTATGGTCATGAAAACAGAGCTGACTTGAATGAAAGGAGAAATATCTTTGTGTTTGATCTTGGAGGAGGTAGCCTCAACGTGGCTCTCGTCAGTTGTGAGGATAATTTCTTCAAGGTTATAGCCACTGGTGGAAGCAATTACGTAGGTGGAGAGGACTTCAACAACCAAATGCTCAGACACTTGATAAAAGTATTCAACAGGAAGAACAAAATAGACATAAGGGAGTATCCAGTAGCATTGAGCAAACTGAGATTTGCATGCTTGACAGCGAAACATGAACTGACGCGCCACAGTAGCACGGTGGTTCAAGTGAAGTCTTTGTGTAAAGGCATCGACTTCTCTGAATCAATCACTCGTGCTAAGTTCGAAGAACTCAACGAGGAGCTGTTTAAAGAATGTATGAAGATAGCAAAGAGGTGTCTCACTGATGCTAAAATAGACAAGAAGAATATTGTGCACGATGTGGTCCTTGTTGGTGGCTCTACTAGGATCCCCAAAGTGAGGGAGCTTTTGGAGAAGTTCTTACCAGCTAGAAATATGCACACCAGCATCCGTGAAGAAGCTGCTGTTCGAGGAGCAGCCCTTTTGGCTGCATTGTTGAGTAATAGCAACATGAATGTCCCAAATCTGGTGCTCTCAAGCCGCAATCCGTTGTCTCTTGGGGTTAGATTACAAGGAAATATCATGTCTGTGATAATTCCGAGAAATGCTTACATTCCCGCAAAGAAGACGGTGGAATTCTTCAATAATGGCCAGGAATCGATTGAATTTGAAGTTTATGAGGGCGAAAGGCTGAAAGCCAGTAGAAACAAATTTTTGGGTAAGTTGAAACTGGATAACCTTCCTAGAGTTCCCAACGGATATCCTGTTTATATAACTTTTAGGGTTGATGAAAATGGTACAGTATATGTCTCTTTAGAGGATAAAAAGAATCAGAGAGAGTTAAGAGTTAAAATAACCAAAGAAAAAAGGTGGTCATCGACTAATGAGATTACAGAAATGATTCGCCAAGCAAAGATTCACGAGGCTGAGGATGCTGCCTACGTTGACAAGGCAATCGCAAGGAATGATTTGAGTTGGTATGTTAATGGAATGGGAAAAGCTTTGAAGGACAATAAGTTCAATTCCAAACTCAGCAAAGAGAATAAGGACAAAATTAATCGTGCAATTCATAAAGCCAACAGAGTGATCGACGATGACATCAATAAACAAGACAAGCAAGTTTTTGAAGATTGTCTCGAGGATGCAAAGAGAGTCTTTAAACCCATCAAGCAAAAGATTGGCTAG 1746 0.4164 MGESYTELAVGINLGTTYSRVAVWRRRNSQVEILTNKHNNSKTPSVVGFTDKDVFIGESALNQATTNAKNTIFADRNDKPQFVMRCKLFSAEDIMYMILKDIWNHLRRKEKKAVITVPACFDGSRREAIKNACKKAGLEILEIIDEPVAAAIAYGHENRADLNERRNIFVFDLGGGSLNVALVSCEDNFFKVIATGGSNYVGGEDFNNQMLRHLIKVFNRKNKIDIREYPVALSKLRFACLTAKHELTRHSSTVVQVKSLCKGIDFSESITRAKFEELNEELFKECMKIAKRCLTDAKIDKKNIVHDVVLVGGSTRIPKVRELLEKFLPARNMHTSIREEAAVRGAALLAALLSNSNMNVPNLVLSSRNPLSLGVRLQGNIMSVIIPRNAYIPAKKTVEFFNNGQESIEFEVYEGERLKASRNKFLGKLKLDNLPRVPNGYPVYITFRVDENGTVYVSLEDKKNQRELRVKITKEKRWSSTNEITEMIRQAKIHEAEDAAYVDKAIARNDLSWYVNGMGKALKDNKFNSKLSKENKDKINRAIHKANRVIDDDINKQDKQVFEDCLEDAKRVFKPIKQKIG 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30248g00020 581 Pfam Hsp70 protein 86 579 IPR013126 GO:0005524|GO:0140662
Stsc30248g00020 581 Pfam Hsp70 protein 9 74 IPR013126 GO:0005524|GO:0140662
Stsc30248g00020 581 SUPERFAMILY Actin-like ATPase domain 8 157 IPR043129 -
Stsc30248g00020 581 Gene3D - 78 351 - -
Stsc30248g00020 581 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 358 508 IPR029047 -
Stsc30248g00020 581 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 507 580 IPR029048 -
Stsc30248g00020 581 PANTHER HEAT SHOCK PROTEIN 70KDA 9 543 IPR013126 GO:0005524|GO:0140662
Stsc30248g00020 581 Gene3D - 159 337 - -
Stsc30248g00020 581 Gene3D - 3 75 - -
Stsc30248g00020 581 ProSitePatterns Heat shock hsp70 proteins family signature 3. 308 322 IPR018181 -
Stsc30248g00020 581 Gene3D - 509 581 IPR029048 -
Stsc30248g00020 581 Gene3D Actin; Chain A, domain 4 202 285 - -
Stsc30248g00020 581 PRINTS 70kDa heat shock protein signature 176 186 - -
Stsc30248g00020 581 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc30248g00020 581 PRINTS 70kDa heat shock protein signature 440 456 - -
Stsc30248g00020 581 PRINTS 70kDa heat shock protein signature 336 356 - -
Stsc30248g00020 581 PRINTS 70kDa heat shock protein signature 362 381 - -
Stsc30248g00020 581 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc30248g00020 581 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc30248g00020 581 PRINTS 70kDa heat shock protein signature 113 133 - -
Stsc30248g00020 581 PRINTS 70kDa heat shock protein signature 305 321 - -
Stsc30248g00020 581 FunFam Endoplasmic reticulum chaperone BiP 4 169 - -
Stsc30248g00020 581 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 360 510 IPR029047 -
Stsc30248g00020 581 SUPERFAMILY Actin-like ATPase domain 165 353 IPR043129 -
Stsc30248g00020 581 FunFam heat shock 70 kDa protein 14 202 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30248g00020 Stsc-Chr30248 145242 148235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30248g00020 9 576 Calmodulin-binding Proteins AT3G12580 41.708 1.52e-146 436