Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30248g00019 ATGAATGAAGCTCAACTAGTCGAGAGAATTGTTAGCGACGTCACTAAGACGCTACACATTGCACTCTTGTTTGTTGCTCAACATCCTGTTGGAGTAGAATCTCGTGTGGAACATGTGATCAATCTCTTAAACTTGCAACAGTCGGAAAATGTTTTGATATTAGGAATCTTGGGAATTGGAGGAATCGGAAAAACAACTATTGCCAAAGCCATTTACAATGAAATTCATCGTCGTTTTGAAGGTCATTGCTTCCTTCCAGATATTAGAGAATCTTGGAAGCAAAGCACTAACCGGGTTCATTTACAAGAACAACTTGTTTCTGACATCTACAAAACAACAAAGATAAAGATACATAACATTGAATCAGGAAAGTTTATATTACAGAATAGGCTTCCTGGGAAAAGGTTACTTCTTATACTTGATGACGTTGATGAATTGGATCAACTAAGAGCCTTATGTGGGAGTCGTGAATGGTTTAGTCCTGGTAGTAGAATAATCATCACAACAAGAAATAAGCACTTACTCAAAGTCATTGAAGCTGATCACATGCCTAAGATTTCAGAGATGGACAATGATGAATCTATTGAGCATTTTCGTTGGCATGCATTCAAAGAAAAAACTCCTGAAGAAGATATGCTTGAACTTTCTAAAAAGGTGGTTGCATATTGTGGGGGATTACCCCTCGCTCATGAAGTAATTGGATCCTTATTGTTAAATAAGAAGAAAAAGTTTTGGGAAAGTGTATTGGAGAAACTTACAAGAATTCCCAATCATGAAGTACAGAAAAAGCTAAGAATAAGTTTTGATAGCTTAAGTGATGATACAGAAAAAGAAATTTTTCTTGATATAGCATTCTTCTTTATTGGGATGGATCGACATGATGTCATAAATATTTTAGAGGAATATGATGCTGAAATGGGGATAAGCAACCTTGTAGATCGAAATCTTGTCATGGTTGATAATAAGAACAAGCTTAGCATGCATGACTTGCTGCGAGATATGGGAAGAGAAGTTGTTCGTGAGAAATTTCCAAAGGAACCAGAGGAGCGTAGCAGGTTATGGTTGCAGAAGGAAGTGCTTGAAGTGTTACAAAAACATATTGGTACAAAAGCTCTTGAGGGACTAACTTTGAAGTTGACAAATACAATTTGTTTGAAGACTGAAGCATTTAAGGAGATGAAGAAACTCAGATTGCTTCAACTTGCAGGTGTACAACTTGGTGGAGATTTTGAATATATTTCAAGAGATTTAAGATGGCTCTACTGGCATGGATTTCCTTTGAAATATATGCCTTCAAACTTTTCTCAAACAAGCTTAGTTTCCATTGAGTTAGAATCTAGCAGTCTCAAATTACTGTGGAAAGAGCCAAAGTTGCTTGAGAGTTTAAAAATTCTCAACCTTAGCCATTCTCAGTATTTGACACAAACCCCGAACTTCTCATACTTGCCTAATCTTGAAAAGCTGTTACTCAACGACTGTCCACGTTTGACTGCAATTTCAGAAACCATTGAACATCTCAAGAACATTCTTTTGATCAATCTGGAAGATTGCACAAGCCTTTCTAATCTTCCAAGAAGCTTCTATAAGTTGAAATCTCTGAAAACTCTCATTATTTCTCGATGCTCTATGATTGACAAATTGGAAGATGATTTGGACCAAATGGAATCCTTGGTAACTCTGATTGCTGATAAGACTGCCATAACACAAGTGCCATTTTCAATAGTAAGATCAAAAAGCATTGGATATGTTTCTTTGTGTGGTTATGAAGGATTCTCGCGTGATGTGTTTCCTTCTCTCATCTGGCCATGGATGTCACCAACAAATAATCTCTCATCTCAAGCTGAAACATGTACGGATTTAGAACTTGTTTCCTCAGATGTAGGAAAGCTTCGAAGTTTGCAAATGGAGTGCAACTCAGATTTTCAACTAGCTGAAGGTATTTCAAGAATTTTGGACACTTTAAATGCAACATACTACAATGAACTTGAAGCTACACCAACTACATCACAAGTCTCAAACATTGGAAGTTCATCCATAATTAGTTTTTGTAATCAATTTCACATGCATGGATTGCTCAAGTCTCTTTTAATTGAAATAGGAGTCAAGAGCCAAATCAGCAACACTCTTAGGGAGAGAATTTTACAGAATTTGAACACCAATGAGCATGACAATGATTTGTTGCCGGGTGACAATTGTCCTGATTGGTTGACCTTTGATTCCGATGGCACTTCTATATTTTTCAATGTCCCTCGCGTGAATGGGCGTGACTTGAAGACAATGACAATGTGCATTCTATATTCTTCTTCTGCAGACACCATCTCATTAAAATGTCTCAAAAATGTGCTGATAATAAATTACACAAAATCCACCATTCAAGTGTACAAGCGTGACACGCTAGCTTCTCTTGAAGATGACGAGTGGCAAAGCATAATTTCAAATTTGGAACCCGGAGACAGAGTTGAGATCATTGTTGTTGTTTATGGGACAGAATTTGTTGTGAAGAAGACATCAGTTTATCTCATATATGGTGAACCAACTAATGAAGAAGTAAAGAACAGCCACGTCAGAGGTGAGAATAATGTTGATGATATGAGAATAGTAGAATACATGAGTCATAAAATCATTTATGAGGACTAA 2637 0.3675 MNEAQLVERIVSDVTKTLHIALLFVAQHPVGVESRVEHVINLLNLQQSENVLILGILGIGGIGKTTIAKAIYNEIHRRFEGHCFLPDIRESWKQSTNRVHLQEQLVSDIYKTTKIKIHNIESGKFILQNRLPGKRLLLILDDVDELDQLRALCGSREWFSPGSRIIITTRNKHLLKVIEADHMPKISEMDNDESIEHFRWHAFKEKTPEEDMLELSKKVVAYCGGLPLAHEVIGSLLLNKKKKFWESVLEKLTRIPNHEVQKKLRISFDSLSDDTEKEIFLDIAFFFIGMDRHDVINILEEYDAEMGISNLVDRNLVMVDNKNKLSMHDLLRDMGREVVREKFPKEPEERSRLWLQKEVLEVLQKHIGTKALEGLTLKLTNTICLKTEAFKEMKKLRLLQLAGVQLGGDFEYISRDLRWLYWHGFPLKYMPSNFSQTSLVSIELESSSLKLLWKEPKLLESLKILNLSHSQYLTQTPNFSYLPNLEKLLLNDCPRLTAISETIEHLKNILLINLEDCTSLSNLPRSFYKLKSLKTLIISRCSMIDKLEDDLDQMESLVTLIADKTAITQVPFSIVRSKSIGYVSLCGYEGFSRDVFPSLIWPWMSPTNNLSSQAETCTDLELVSSDVGKLRSLQMECNSDFQLAEGISRILDTLNATYYNELEATPTTSQVSNIGSSSIISFCNQFHMHGLLKSLLIEIGVKSQISNTLRERILQNLNTNEHDNDLLPGDNCPDWLTFDSDGTSIFFNVPRVNGRDLKTMTMCILYSSSADTISLKCLKNVLIINYTKSTIQVYKRDTLASLEDDEWQSIISNLEPGDRVEIIVVVYGTEFVVKKTSVYLIYGEPTNEEVKNSHVRGENNVDDMRIVEYMSHKIIYED 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30248g00019 878 PRINTS Disease resistance protein signature 130 144 - -
Stsc30248g00019 878 PRINTS Disease resistance protein signature 223 237 - -
Stsc30248g00019 878 PRINTS Disease resistance protein signature 457 473 - -
Stsc30248g00019 878 PRINTS Disease resistance protein signature 53 68 - -
Stsc30248g00019 878 Coils Coil 544 564 - -
Stsc30248g00019 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 283 IPR027417 -
Stsc30248g00019 878 Gene3D Ribonuclease Inhibitor 356 589 IPR032675 -
Stsc30248g00019 878 Gene3D - 15 183 IPR027417 -
Stsc30248g00019 878 Gene3D - 188 272 IPR042197 -
Stsc30248g00019 878 SUPERFAMILY L domain-like 327 635 - -
Stsc30248g00019 878 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 634 IPR044974 GO:0006952
Stsc30248g00019 878 Pfam NB-ARC domain 33 264 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30248g00019 Stsc-Chr30248 133339 136701 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30248g00019 2 574 WRKY Transcription Factor Family AT4G12020 31.491 4.54e-65 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30248g00019 - - ahf:112749706 1450.65