Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30248g00017 ATGTCTTACCAATCAGCAGAGACATGGAAGTACGATGTGTATATGAGTTTCCGAAGCGAGACTCGCTACCCATTCTGCTCATATCTGTATCAAGCTTTCAGGATGGCTGGAATTCATGCTTACACCGACGATACGGAAAGTCGGACTGGAGGCGAGTTGACATACACAGTGATTCAAGCAATCGAAGCTTCTAGAGTTTCTGTTGTTGTACTGTCACAAGGTTATTCTAGATCAAGATGGTGCCTGGAGGAGCTGGCGAAAATAATGGAGTGTAGAAGCTCGATACGACGTCAGACCGTCATTCCGGTGTTCTACCGTGATGATCCGGCAGATGTTGGCCACCAGAGAGGTCCTTTTGTTAAAGCTTTTCGAAGTCACAGGAATGGGTTCTCAGATGAGAGTGAGAGAATCGACGCATGGAGGACAGCGCTCAATCAAGCTGCTAACCTTCCTGGATTTGAAATCAGCATCAACAAAGATGAATCTGAAGTTATCAGAAATATTGTTGAACATGTAACTAAGCTGCTAGTTTCGGAAGAGTTGTTCATCACAAAGCATCCAGTAGGAGTACAATCTCGAATGGAAGAAGTGATTCAACAATTACATTCTCATACATCACCAGATGGTATCGTGCTAACGGGGATATGGGGTATGGGAGGAGTGGGTAAAACAACCATTGCCAAAGCTGTTTATAATCAAATCCGTTACAGTTTTGATAGACCAATGTTCCTCCCAAACATTAGGGAGATGTGGGAGAAAAACAAACTGGTTTTTCTACAAGAACAACTGTTGAACTTCATTTGCAAAGCAGGGGTACAGGTACAAAGCATCGCATCAGGGGTAGCTAAATTAAAGGAAAAACTTTGCCAAGAAAAGGTACTTATTGTACTTGATGATGTAACTAATATATATCAGTTGAATGCCTTGTGTGGAAGTCGAGAATGGTTTGGTCCAGGGAGTGTAATAATCATCACAACAAGAGATAGACGCCTGCTTCATATGATTGGAGTTGACCATGTGTATCAAGTGACCAAAATGGATTCCGAAGAATCTCTTGAACTTTTTCGTCGGAATGCATTTACGCAAGCAACTCCACAAGAGTTTGATAGAGTTGAAACAGATGTAGTTGCATGTTGTGGGGGGTTGCCATTGGCCCTTGTAACAATTGGCTGTCAATTGTTTGGAAAGACGATAGATGAGTGGGAGATTGTATTAGGTGGACTCAAAAGGCGTCCCCATCCGGGCGTACATGATGTATTGAAAAGAAGCTATGATGGCTTAAATGATGAACAACAGAGAGAAATATTTCTTGATATAGCTAGCTTTTGTGTTGGCATGGAAAGAAGCGAGGCATTGCAAACTCTAAGTGATGCCTTTGGAATTCCCCTAGATGAAATCAGTTTTCTTCAAGAGCAGAGTCTTATAGAATTTGATGATCAAGACATGGTTCGGATGCATCCTCTGTTGCGAGACATGGGAACACAAATCGTTCGAGAGCTATCACAAACTCAGGCTCAGGAAAGGAAGTACGATGTTTTCGTGAGTTTTCGAGGCGGGGACACTCGTTCAGGATTTACATCACATCTGCATACATATCTCCAAAATGCTGCATTAACTGTTTTTAAGGATGATGACGATGTTGATGGACTTCAAAGGGGAGAACGGATTTCAATGGCATTGTTAAAAGCAATTGGATTGTCTGCATGTTCTGTGGTTGTTTTGTCAACCCACTATGCTAATTCAAAATGGTGCCTGCAAGAGCTTGAGAACATCATGGTATGCCACAGAACAAAAGGTCAACTGGTTTTCCCTGTATTCTTAGGAGTACATCCCGCAGATGTACGCTATCAAAGGAAAGAGAGTGCATTTGGGAAAGCTTTTGAAAGTCTTATAAATGGTAAAAGACCAGTGGAAGCAGATAAGGTGCAAAGATGGAAAACAGATCTTTTTGAAGTCAGTAGCTTTTCAGGGAAGACTGTGACAGACTCCAGATCAATAGGTCAAGCACTGCAATACCGCGAACCTGGATTTTATTCAAGGATCTGTCATTGGTTAATGAGCTGCTGCATACCCAATAATGAGAGTTTTGAATCTTCAACACTTACGAATGAAGCTGAAGATATCAAAAGAATTGTTGAAGATGTTACTCGTTTACTAGATAAGACAGAGATGTCCATTGCAAGACATCCAGTGGGAGTAGAATCTCGTGTGAAAAAGGTGATTGAAGAATCAAACATTCTTAAGGTGATTGAAGAATCAAACATTCAAGGACGAACAAAAGATGTTCTGACAATTGGGATAAATGGCATGGGGGGAATTGGTAAAACAACTATTGTCAAAGCCATCTATAATCAAATCGGTCGCAAGTTTGAAGCCAGGAGCTTCCTCCAAGACATTAGGAAAACTTGGCAGCAAGATAATGGAAATGTTTCCTTGCAACAGCGACTTCTTGAGGATATATTCAGAGGAACTAGGATAGAGATACATAACATTGATTCTGGGAAGCAAATATTAAAGGATAAGCTTAAAGGTAAAAAGGTATTCATTGTGCTTGACGATGTGACTGATTTGGACCAACTGGATGCTTTGTGTGGAAGTGGTGAATGGTGTGGCCCTGGAAGCATATTAATCATCACAACAAGGAATAATGATCTTCTTAAAGTGTGTAAACACACATTCAGTGAACAAGAGATGAAATTGGAACCAGCTGAATGCCTTGAGCTTTTTAGTTGGCATGCATTCAGAAAACCATGGCCTCCCGAAGCTACTGATGAGTCTTTGATTGAGCTTTCCGAAGAAATAGTTAAATATTGTAGTAGATTGCCACTAGCTCTGGAAGTTCTTGGGTCCAATTTGTTTAACTGTGGAATAGAAGTTTGGAATACAACATTGGAAAGACTGAAATCAATTCCCCCCGATGGAGTCCTGGAGAAACTACAAATAAGTTATGATGGCTTAAGAAATAAAGATGAAAAAGAAATATTCCTTGACATCGTATGCTTCTTCATAGGGATGGATCGAAATGAAGTTATCCAGATATTAAATAGTTGCGGCCTCGATGCAGAATATGGAATCAATCTCCTTAAAGAGCGAAACCTTGTCACTGTTGATAAGAATAATATGCTTGGAATGCATGATTTGGTAAGAGATATGGGAAGAGCAATAATTCGTGAGCAATCACCTAAACTTGAAGAGCGCGGGAGATTATGGTACCACCAAACAGAAACAGAAACAGAAACAAAAACAAAAACAAAAACAAAAACAGAAACACAATTCTCAGTGCTTAAACTATTAAAGATTCAGGAGGAGGAGGGAGAAAAATTAAAAAAGGTCACGGGATTGAGTTTGAAGCTGCCAACCACCAATTCGTTCTGTTTGAGTGAAAAAACATTTAAGACTATGCCTAAACTCAGATTACTTCAACTCGCCAGTGTAGAATCTAATGGAAAGTTCAAAAATCTTTCAAGATATCTTAAATGGATGAGTTGGCATGGATTTCCTTTGAAACACACTCCCATGGACTGCTTTGAATCAGATACAATTTCCATTGAGTTAGAAAACAGCAAGCTCGAAGTTCTATGGAAGGAGCCGCCGATGAAGATGTTGCCCCCAATCAAATGA 3621 0.4032 MSYQSAETWKYDVYMSFRSETRYPFCSYLYQAFRMAGIHAYTDDTESRTGGELTYTVIQAIEASRVSVVVLSQGYSRSRWCLEELAKIMECRSSIRRQTVIPVFYRDDPADVGHQRGPFVKAFRSHRNGFSDESERIDAWRTALNQAANLPGFEISINKDESEVIRNIVEHVTKLLVSEELFITKHPVGVQSRMEEVIQQLHSHTSPDGIVLTGIWGMGGVGKTTIAKAVYNQIRYSFDRPMFLPNIREMWEKNKLVFLQEQLLNFICKAGVQVQSIASGVAKLKEKLCQEKVLIVLDDVTNIYQLNALCGSREWFGPGSVIIITTRDRRLLHMIGVDHVYQVTKMDSEESLELFRRNAFTQATPQEFDRVETDVVACCGGLPLALVTIGCQLFGKTIDEWEIVLGGLKRRPHPGVHDVLKRSYDGLNDEQQREIFLDIASFCVGMERSEALQTLSDAFGIPLDEISFLQEQSLIEFDDQDMVRMHPLLRDMGTQIVRELSQTQAQERKYDVFVSFRGGDTRSGFTSHLHTYLQNAALTVFKDDDDVDGLQRGERISMALLKAIGLSACSVVVLSTHYANSKWCLQELENIMVCHRTKGQLVFPVFLGVHPADVRYQRKESAFGKAFESLINGKRPVEADKVQRWKTDLFEVSSFSGKTVTDSRSIGQALQYREPGFYSRICHWLMSCCIPNNESFESSTLTNEAEDIKRIVEDVTRLLDKTEMSIARHPVGVESRVKKVIEESNILKVIEESNIQGRTKDVLTIGINGMGGIGKTTIVKAIYNQIGRKFEARSFLQDIRKTWQQDNGNVSLQQRLLEDIFRGTRIEIHNIDSGKQILKDKLKGKKVFIVLDDVTDLDQLDALCGSGEWCGPGSILIITTRNNDLLKVCKHTFSEQEMKLEPAECLELFSWHAFRKPWPPEATDESLIELSEEIVKYCSRLPLALEVLGSNLFNCGIEVWNTTLERLKSIPPDGVLEKLQISYDGLRNKDEKEIFLDIVCFFIGMDRNEVIQILNSCGLDAEYGINLLKERNLVTVDKNNMLGMHDLVRDMGRAIIREQSPKLEERGRLWYHQTETETETKTKTKTKTETQFSVLKLLKIQEEEGEKLKKVTGLSLKLPTTNSFCLSEKTFKTMPKLRLLQLASVESNGKFKNLSRYLKWMSWHGFPLKHTPMDCFESDTISIELENSKLEVLWKEPPMKMLPPIK 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30248g00017 1206 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 153 IPR035897 -
Stsc30248g00017 1206 SUPERFAMILY Toll/Interleukin receptor TIR domain 502 657 IPR035897 -
Stsc30248g00017 1206 Gene3D - 345 428 IPR042197 -
Stsc30248g00017 1206 Gene3D - 899 987 IPR042197 -
Stsc30248g00017 1206 SUPERFAMILY "Winged helix" DNA-binding domain 416 502 IPR036390 -
Stsc30248g00017 1206 Gene3D - 503 723 IPR035897 -
Stsc30248g00017 1206 ProSiteProfiles TIR domain profile. 508 653 IPR000157 GO:0007165
Stsc30248g00017 1206 Gene3D - 4 174 IPR035897 -
Stsc30248g00017 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 998 IPR027417 -
Stsc30248g00017 1206 PRINTS Disease resistance protein signature 379 393 - -
Stsc30248g00017 1206 PRINTS Disease resistance protein signature 556 572 - -
Stsc30248g00017 1206 PRINTS Disease resistance protein signature 212 227 - -
Stsc30248g00017 1206 PRINTS Disease resistance protein signature 287 301 - -
Stsc30248g00017 1206 ProSiteProfiles TIR domain profile. 9 172 IPR000157 GO:0007165
Stsc30248g00017 1206 SUPERFAMILY "Winged helix" DNA-binding domain 975 1073 IPR036390 -
Stsc30248g00017 1206 SMART AAA_5 761 904 IPR003593 GO:0016887
Stsc30248g00017 1206 SMART AAA_5 209 347 IPR003593 GO:0016887
Stsc30248g00017 1206 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 510 1193 IPR044974 GO:0006952
Stsc30248g00017 1206 SMART till_3 509 655 IPR000157 GO:0007165
Stsc30248g00017 1206 SMART till_3 10 150 IPR000157 GO:0007165
Stsc30248g00017 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 439 IPR027417 -
Stsc30248g00017 1206 Gene3D - 724 895 IPR027417 -
Stsc30248g00017 1206 Gene3D - 175 340 IPR027417 -
Stsc30248g00017 1206 Pfam NB-ARC domain 760 967 IPR002182 GO:0043531
Stsc30248g00017 1206 Pfam NB-ARC domain 191 424 IPR002182 GO:0043531
Stsc30248g00017 1206 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Stsc30248g00017 1206 Pfam TIR domain 10 174 IPR000157 GO:0007165
Stsc30248g00017 1206 Pfam TIR domain 509 658 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30248g00017 Stsc-Chr30248 113180 123116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30248g00017 188 511 WRKY Transcription Factor Family AT5G45050 34.756 1.30e-44 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30248g00017 - - aip:107625711 1432.54